Chrna1os Gene Detail

Summary

• Symbol
  Chrna1os
• Name
  cholinergic receptor nicotinic alpha 1 subunit, opposite strand
• Synonyms
  Gm13705, Gm31264

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3651120
  NCBI Gene: 102633437
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:73415204-73419552 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651120	antisense lncRNA gene	Chr2:73415171-73419563 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003589	antisense lncRNA gene	Chr2:73872514-73878307 (+)
A/J	MGP_AJ_G0003571	antisense lncRNA gene	Chr2:70969786-70974178 (+)
AKR/J	MGP_AKRJ_G0003549	antisense lncRNA gene	Chr2:72917280-72921704 (+)
BALB/cJ	MGP_BALBcJ_G0003560	antisense lncRNA gene	Chr2:71159099-71163491 (+)
C3H/HeJ	MGP_C3HHeJ_G0003507	antisense lncRNA gene	Chr2:73102709-73107093 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003698	antisense lncRNA gene	Chr2:76068354-76074420 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003207	antisense lncRNA gene	Chr2:68400988-68405428 (+)
CAST/EiJ	MGP_CASTEiJ_G0003470	antisense lncRNA gene	Chr2:73381582-73387581 (+)
CBA/J	MGP_CBAJ_G0003504	antisense lncRNA gene	Chr2:78844223-78848620 (+)
DBA/2J	MGP_DBA2J_G0003512	antisense lncRNA gene	Chr2:70566317-70571152 (+)
FVB/NJ	MGP_FVBNJ_G0003532	antisense lncRNA gene	Chr2:69980767-69985102 (+)
LP/J	MGP_LPJ_G0003585	antisense lncRNA gene	Chr2:73743817-73748994 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003520	antisense lncRNA gene	Chr2:80763864-80768221 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003700	antisense lncRNA gene	Chr2:73005787-73010145 (+)
PWK/PhJ	MGP_PWKPhJ_G0003425	antisense lncRNA gene	Chr2:70494347-70499680 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003369	antisense lncRNA gene	Chr2:73241288-73245603 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Chrna1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Targeted
  6
• Genomic Mutations
  7 involving Chrna1os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086382 (Evidence)
• NCBI Gene
  102633437

Representative Sequences			Length	Strain/Species
genomic	102633437	NCBI Gene Model | MGI Sequence Detail	4349	C57BL/6J
transcript	NR_153820	RefSeq | MGI Sequence Detail	493	ZRU/MplStud

Other
Accession IDs

MGI:5590423

References

• Summaries
  All 20

  Phenotypes 13
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729

TSS for Chrna1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18384	Chr2:73415179-73415235 (+)	3 bp