Lrp8os3 Gene Detail

Summary

• Symbol
  Lrp8os3
• Name
  low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 3
• Synonyms
  Gm12908

• Feature Type
  bidirectional promoter lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3651133
  NCBI Gene: 105244644
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:107650358-107659261 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 50.18 cM

Strain
Comparison

• SNPs within 2kb
  310 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651133	bidirectional promoter lncRNA gene	Chr4:107650346-107659261 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004756	bidirectional promoter lncRNA gene	Chr4:108490925-108501658 (-)
A/J	MGP_AJ_G0004737	bidirectional promoter lncRNA gene	Chr4:104596767-104605536 (-)
AKR/J	MGP_AKRJ_G0004717	bidirectional promoter lncRNA gene	Chr4:107167833-107176631 (-)
BALB/cJ	MGP_BALBcJ_G0004719	bidirectional promoter lncRNA gene	Chr4:104794403-104803797 (-)
C3H/HeJ	MGP_C3HHeJ_G0004667	bidirectional promoter lncRNA gene	Chr4:107909648-107920002 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004869	bidirectional promoter lncRNA gene	Chr4:112385774-112394569 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004308	bidirectional promoter lncRNA gene	Chr4:99903567-99912455 (-)
CAST/EiJ	MGP_CASTEiJ_G0004621	bidirectional promoter lncRNA gene	Chr4:105745069-105753910 (-)
CBA/J	MGP_CBAJ_G0004660	bidirectional promoter lncRNA gene	Chr4:116024031-116032908 (-)
DBA/2J	MGP_DBA2J_G0004678	bidirectional promoter lncRNA gene	Chr4:104219683-104228547 (-)
FVB/NJ	MGP_FVBNJ_G0004697	bidirectional promoter lncRNA gene	Chr4:103086334-103095557 (-)
LP/J	MGP_LPJ_G0004757	bidirectional promoter lncRNA gene	Chr4:108692152-108701052 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004682	bidirectional promoter lncRNA gene	Chr4:121297336-121307741 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004872	bidirectional promoter lncRNA gene	Chr4:107411277-107420982 (-)
PWK/PhJ	MGP_PWKPhJ_G0004574	bidirectional promoter lncRNA gene	Chr4:102467661-102477036 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004507	bidirectional promoter lncRNA gene	Chr4:104782235-104791069 (-)
WSB/EiJ	MGP_WSBEiJ_G0004666	bidirectional promoter lncRNA gene	Chr4:107593659-107602526 (-)

Homology

• Gene Tree
  Lrp8os3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Lrp8os3
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000087200 (Evidence)
• NCBI Gene
  105244644

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087200	Ensembl Gene Model | MGI Sequence Detail	8904	C57BL/6J
transcript	ENSMUST00000125464	Ensembl | MGI Sequence Detail	1770	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Lrp8os3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42696	Chr4:107660871-107660894 (-)	-1,622 bp
Tssr42695	Chr4:107660578-107660589 (-)	-1,323 bp
Tssr42694	Chr4:107660562-107660566 (-)	-1,303 bp