Gm13597 Pseudogene Detail

Summary

• Symbol
  Gm13597
• Name
  predicted gene 13597

• Feature Type
  pseudogene
• IDs
  MGI:3651139
  NCBI Gene: 100039683
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:68384899-68385273 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 39.53 cM

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651139	pseudogene	Chr2:68384846-68386094 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011980	pseudogene	Chr2:178475201-178475575 (-)
A/J	MGP_AJ_G0010765	pseudogene	Chr11:71087823-71088664 (+)
AKR/J	MGP_AKRJ_G0010722	pseudogene	Chr11:73259820-73260658 (+)
BALB/cJ	MGP_BALBcJ_G0010738	pseudogene	Chr11:71388242-71389080 (+)
C3H/HeJ	MGP_C3HHeJ_G0010647	pseudogene	Chr11:73210069-73211703 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009641	pseudogene	Chr11:67893361-67894202 (+)
CAST/EiJ	MGP_CASTEiJ_G0010470	pseudogene	Chr11:73595455-73596293 (+)
CBA/J	MGP_CBAJ_G0010621	pseudogene	Chr11:79458856-79460818 (+)
DBA/2J	MGP_DBA2J_G0010660	pseudogene	Chr11:70715020-70716461 (+)
FVB/NJ	MGP_FVBNJ_G0010676	pseudogene	Chr11:70261249-70262186 (+)
LP/J	MGP_LPJ_G0010750	pseudogene	Chr11:74377556-74377930 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010651	pseudogene	Chr11:79974076-79975508 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010989	pseudogene	Chr11:73441105-73441954 (+)
PWK/PhJ	MGP_PWKPhJ_G0010362	pseudogene	Chr11:71356295-71357133 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010176	pseudogene	Chr11:73157429-73158267 (+)
WSB/EiJ	MGP_WSBEiJ_G0010527	pseudogene	Chr11:73188757-73194023 (+)

Homology

• Gene Tree
  Gm13597
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13597
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000075312 (Evidence)
• NCBI Gene
  100039683

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075312	Ensembl Gene Model | MGI Sequence Detail	375	C57BL/6J
transcript	ENSMUST00000121239	Ensembl | MGI Sequence Detail	375	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13597:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18023	Chr2:68384839-68384846 (+)	-56 bp