Gm13596 Gene Detail

Summary

• Symbol
  Gm13596
• Name
  predicted gene 13596

• Feature Type
  lncRNA gene
• IDs
  MGI:3651140
  NCBI Gene: 102641539
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:68301216-68308096 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 39.53 cM

Strain
Comparison

• SNPs within 2kb
  280 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651140	lncRNA gene	Chr2:68301216-68312619 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003578	antisense lncRNA gene	Chr2:68394394-68396064 (+)
A/J	MGP_AJ_G0003559	antisense lncRNA gene	Chr2:65757266-65758936 (+)
AKR/J	MGP_AKRJ_G0003537	antisense lncRNA gene	Chr2:67536632-67538306 (+)
BALB/cJ	MGP_BALBcJ_G0003548	antisense lncRNA gene	Chr2:65941810-65943480 (+)
C3H/HeJ	MGP_C3HHeJ_G0003495	antisense lncRNA gene	Chr2:67751887-67753556 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003686	antisense lncRNA gene	Chr2:70442113-70443783 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003195	antisense lncRNA gene	Chr2:63020049-63021769 (+)
CAST/EiJ	MGP_CASTEiJ_G0003458	antisense lncRNA gene	Chr2:67873707-67875400 (+)
CBA/J	MGP_CBAJ_G0003492	antisense lncRNA gene	Chr2:73031852-73033521 (+)
DBA/2J	MGP_DBA2J_G0003500	antisense lncRNA gene	Chr2:65412152-65413821 (+)
FVB/NJ	MGP_FVBNJ_G0003520	antisense lncRNA gene	Chr2:64784108-64785778 (+)
LP/J	MGP_LPJ_G0003573	antisense lncRNA gene	Chr2:68250052-68251722 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003508	antisense lncRNA gene	Chr2:75125868-75127537 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003689	antisense lncRNA gene	Chr2:67602190-67603860 (+)
PWK/PhJ	MGP_PWKPhJ_G0003413	antisense lncRNA gene	Chr2:65232325-65233995 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003358	antisense lncRNA gene	Chr2:67819771-67821476 (+)
WSB/EiJ	MGP_WSBEiJ_G0003493	antisense lncRNA gene	Chr2:68044066-68045735 (+)

Homology

• Gene Tree
  Gm13596
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13596
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000085182 (Evidence)
• NCBI Gene
  102641539

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085182	Ensembl Gene Model | MGI Sequence Detail	6881	C57BL/6J
transcript	ENSMUST00000153354	Ensembl | MGI Sequence Detail	660	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13596:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18022	Chr2:68301188-68301199 (+)	-22 bp