Gm12507 Pseudogene Detail

Summary

• Symbol
  Gm12507
• Name
  predicted gene 12507

• Feature Type
  pseudogene
• IDs
  MGI:3651171
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:55508294-55508708 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 29.76 cM

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651171	pseudogene	Chr4:55508294-55508708 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012672	pseudogene	Chr4:54220847-54221273 (+)
A/J	MGP_AJ_G0012661	pseudogene	Chr4:52137541-52137968 (+)
AKR/J	MGP_AKRJ_G0012631	pseudogene	Chr4:53550802-53551229 (+)
BALB/cJ	MGP_BALBcJ_G0012644	pseudogene	Chr4:52300664-52301091 (+)
C3H/HeJ	MGP_C3HHeJ_G0012503	pseudogene	Chr4:54080401-54080828 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012970	pseudogene	Chr4:56179175-56179589 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011276	pseudogene	Chr4:49005876-49006305 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012483	pseudogene	Chr4:58102158-58102585 (+)
DBA/2J	MGP_DBA2J_G0012541	pseudogene	Chr4:52062429-52062856 (+)
FVB/NJ	MGP_FVBNJ_G0012542	pseudogene	Chr4:51291646-51292073 (+)
LP/J	MGP_LPJ_G0012613	pseudogene	Chr4:54303794-54304218 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012550	pseudogene	Chr4:61285476-61285903 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012973	pseudogene	Chr4:53781504-53781931 (+)
PWK/PhJ	MGP_PWKPhJ_G0012086	pseudogene	Chr4:52039609-52040106 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011900	pseudogene	Chr4:53045892-53046319 (+)
WSB/EiJ	MGP_WSBEiJ_G0012281	pseudogene	Chr4:53690260-53690697 (+)

Homology

• Gene Tree
  Gm12507
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000082952 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082952	Ensembl Gene Model | MGI Sequence Detail	415	C57BL/6J
transcript	ENSMUST00000119155	Ensembl | MGI Sequence Detail	415	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;