Gm12493 Gene Detail

Summary

• Symbol
  Gm12493
• Name
  predicted gene 12493

• Feature Type
  lncRNA gene
• IDs
  MGI:3651194
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:44967730-44972613 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 23.64 cM

Strain
Comparison

• SNPs within 2kb
  303 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651194	lncRNA gene	Chr4:44967730-44972613 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003894	antisense lncRNA gene	Chr4:43172836-43176163 (+)
A/J	MGP_AJ_G0003874	antisense lncRNA gene	Chr4:41630146-41633506 (+)
AKR/J	MGP_AKRJ_G0003851	antisense lncRNA gene	Chr4:42622383-42625711 (+)
BALB/cJ	MGP_BALBcJ_G0003861	antisense lncRNA gene	Chr4:41715767-41719093 (+)
C3H/HeJ	MGP_C3HHeJ_G0003807	antisense lncRNA gene	Chr4:43224606-43227936 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004008	antisense lncRNA gene	Chr4:44812870-44816194 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003502	antisense lncRNA gene	Chr4:39028336-39031652 (+)
CAST/EiJ	MGP_CASTEiJ_G0003772	antisense lncRNA gene	Chr4:42775033-42778361 (+)
CBA/J	MGP_CBAJ_G0003800	antisense lncRNA gene	Chr4:46193606-46196934 (+)
DBA/2J	MGP_DBA2J_G0003817	antisense lncRNA gene	Chr4:41529802-41533128 (+)
FVB/NJ	MGP_FVBNJ_G0003835	antisense lncRNA gene	Chr4:40753932-40757259 (+)
LP/J	MGP_LPJ_G0003896	antisense lncRNA gene	Chr4:43234422-43237746 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003823	antisense lncRNA gene	Chr4:49349077-49352403 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004004	antisense lncRNA gene	Chr4:42827441-42830770 (+)
PWK/PhJ	MGP_PWKPhJ_G0003727	antisense lncRNA gene	Chr4:41585558-41588880 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003673	antisense lncRNA gene	Chr4:42354291-42357597 (+)
WSB/EiJ	MGP_WSBEiJ_G0003807	antisense lncRNA gene	Chr4:42711345-42714670 (+)

Homology

• Gene Tree
  Gm12493
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086000 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086000	Ensembl Gene Model | MGI Sequence Detail	4884	C57BL/6J
transcript	ENSMUST00000150111	Ensembl | MGI Sequence Detail	1997	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12493:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37043	Chr4:44967765-44967772 (+)	39 bp