Gm11896 Pseudogene Detail

Summary

• Symbol
  Gm11896
• Name
  predicted gene 11896

• Feature Type
  pseudogene
• IDs
  MGI:3651205
  NCBI Gene: 100418387
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:25538850-25539669 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 10.59 cM

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651205	pseudogene	Chr4:25538838-25539669 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012564	pseudogene	Chr4:22650284-22651103 (+)
A/J	MGP_AJ_G0012555	pseudogene	Chr4:21993183-21997117 (+)
AKR/J	MGP_AKRJ_G0012522	pseudogene	Chr4:22481493-22486971 (+)
BALB/cJ	MGP_BALBcJ_G0012541	pseudogene	Chr4:22049680-22050499 (+)
C3H/HeJ	MGP_C3HHeJ_G0012403	pseudogene	Chr4:22682073-22682892 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012856	pseudogene	Chr4:23649991-23654184 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011188	pseudogene	Chr4:20416285-20417078 (+)
CAST/EiJ	MGP_CASTEiJ_G0012160	pseudogene	Chr4:22372491-22373310 (+)
CBA/J	MGP_CBAJ_G0012381	pseudogene	Chr4:24269341-24273342 (+)
DBA/2J	MGP_DBA2J_G0012435	pseudogene	Chr4:21904006-21904825 (+)
FVB/NJ	MGP_FVBNJ_G0012438	pseudogene	Chr4:21520575-21521394 (+)
LP/J	MGP_LPJ_G0012509	pseudogene	Chr4:22775736-22776554 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012444	pseudogene	Chr4:25786854-25787673 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012858	pseudogene	Chr4:22459581-22460400 (+)
PWK/PhJ	MGP_PWKPhJ_G0011991	pseudogene	Chr4:21574023-21574842 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013171	pseudogene	Chr9:4766126-4766945 (-)
WSB/EiJ	MGP_WSBEiJ_G0012185	pseudogene	Chr4:22420054-22423760 (+)

Homology

• Gene Tree
  Gm11896
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081369 (Evidence)
• NCBI Gene
  100418387

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081369	Ensembl Gene Model | MGI Sequence Detail	820	C57BL/6J
transcript	ENSMUST00000121105	Ensembl | MGI Sequence Detail	820	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;