Gm11898 Pseudogene Detail

Summary

• Symbol
  Gm11898
• Name
  predicted gene 11898

• Feature Type
  pseudogene
• IDs
  MGI:3651207
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:25854515-25854899 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 10.66 cM

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651207	pseudogene	Chr4:25854515-25854899 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012566	pseudogene	Chr4:22972811-22973195 (-)
A/J	MGP_AJ_G0012557	pseudogene	Chr4:22288203-22288587 (-)
AKR/J	MGP_AKRJ_G0012523	pseudogene	Chr4:22808694-22809078 (-)
BALB/cJ	MGP_BALBcJ_G0012543	pseudogene	Chr4:22371274-22371658 (-)
C3H/HeJ	MGP_C3HHeJ_G0012405	pseudogene	Chr4:22992508-22992892 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012858	pseudogene	Chr4:23985856-23986240 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011189	pseudogene	Chr4:20697241-20697625 (-)
CAST/EiJ	MGP_CASTEiJ_G0012161	pseudogene	Chr4:22681481-22681865 (-)
CBA/J	MGP_CBAJ_G0012383	pseudogene	Chr4:24622853-24623237 (-)
DBA/2J	MGP_DBA2J_G0012436	pseudogene	Chr4:22217162-22217546 (-)
FVB/NJ	MGP_FVBNJ_G0012440	pseudogene	Chr4:21816823-21817207 (-)
LP/J	MGP_LPJ_G0012510	pseudogene	Chr4:23092398-23092772 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012446	pseudogene	Chr4:26203984-26204368 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012859	pseudogene	Chr4:22772486-22772870 (-)
PWK/PhJ	MGP_PWKPhJ_G0011993	pseudogene	Chr4:21878243-21878627 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011811	pseudogene	Chr4:22564626-22565010 (-)
WSB/EiJ	MGP_WSBEiJ_G0012186	pseudogene	Chr4:22727877-22728261 (-)

Homology

• Gene Tree
  Gm11898
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083835 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083835	Ensembl Gene Model | MGI Sequence Detail	385	C57BL/6J
transcript	ENSMUST00000117161	Ensembl | MGI Sequence Detail	385	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;