Rpsa-ps12 Pseudogene Detail

Summary

• Symbol
  Rpsa-ps12
• Name
  ribosomal protein SA, pseudogene 12
• Synonyms
  Gm13208

• Feature Type
  pseudogene
• IDs
  MGI:3651234
  NCBI Gene: 666774
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:149226954-149227845 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.94 cM

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651234	pseudogene	Chr4:149226889-149227922 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012938	pseudogene	Chr4:152960960-152961851 (-)
A/J	MGP_AJ_G0012924	pseudogene	Chr4:146582873-146583760 (-)
AKR/J	MGP_AKRJ_G0012892	pseudogene	Chr4:150601432-150602168 (-)
BALB/cJ	MGP_BALBcJ_G0012903	pseudogene	Chr4:147092777-147094279 (-)
C3H/HeJ	MGP_C3HHeJ_G0012756	pseudogene	Chr4:151159998-151163396 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012725	pseudogene	Chr4:163140712-163141706 (-)
DBA/2J	MGP_DBA2J_G0012800	pseudogene	Chr4:146703172-146704049 (-)
FVB/NJ	MGP_FVBNJ_G0013739	pseudogene	Chr7:38461337-38462608 (+)
LP/J	MGP_LPJ_G0012869	pseudogene	Chr4:152898207-152899098 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013765	pseudogene	Chr7:41777638-41778496 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013262	pseudogene	Chr4:151093571-151094796 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012146	pseudogene	Chr4:10930552-10931352 (+)

Homology

• Gene Tree
  Rpsa-ps12
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000080746 (Evidence)
• NCBI Gene
  666774

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080746	Ensembl Gene Model | MGI Sequence Detail	892	C57BL/6J
transcript	ENSMUST00000120596	Ensembl | MGI Sequence Detail	892	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rpsa-ps12:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44625	Chr4:149227916-149227924 (-)	-75 bp