Gm13562 Gene Detail

Summary

• Symbol
  Gm13562
• Name
  predicted gene 13562

• Feature Type
  lncRNA gene
• IDs
  MGI:3651238
  NCBI Gene: 115489442
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:26242657-26261964 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 18.87 cM

Strain
Comparison

• SNPs within 2kb
  488 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651238	lncRNA gene	Chr2:26242114-26262365 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015401	unclassified non-coding RNA gene	Chr2:24300912-24320316 (+)
A/J	MGP_AJ_G0015376	unclassified non-coding RNA gene	Chr2:23369866-23389310 (+)
AKR/J	MGP_AKRJ_G0015340	unclassified non-coding RNA gene	Chr2:24132004-24151342 (+)
BALB/cJ	MGP_BALBcJ_G0015340	unclassified non-coding RNA gene	Chr2:23478579-23497886 (+)
C3H/HeJ	MGP_C3HHeJ_G0015164	unclassified non-coding RNA gene	Chr2:24089584-24108891 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015794	unclassified non-coding RNA gene	Chr2:25084651-25103958 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013535	unclassified non-coding RNA gene	Chr2:22248613-22268238 (+)
CAST/EiJ	MGP_CASTEiJ_G0014715	unclassified non-coding RNA gene	Chr2:23963602-23983010 (+)
CBA/J	MGP_CBAJ_G0015143	unclassified non-coding RNA gene	Chr2:25934039-25953346 (+)
DBA/2J	MGP_DBA2J_G0015238	unclassified non-coding RNA gene	Chr2:23191494-23210829 (+)
FVB/NJ	MGP_FVBNJ_G0015245	unclassified non-coding RNA gene	Chr2:22943164-22962471 (+)
LP/J	MGP_LPJ_G0015318	unclassified non-coding RNA gene	Chr2:24247386-24266794 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015271	unclassified non-coding RNA gene	Chr2:26083770-26103077 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015833	unclassified non-coding RNA gene	Chr2:24088271-24107648 (+)
PWK/PhJ	MGP_PWKPhJ_G0014504	unclassified non-coding RNA gene	Chr2:22994377-23013916 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014292	unclassified non-coding RNA gene	Chr2:24218377-24240920 (+)
WSB/EiJ	MGP_WSBEiJ_G0014822	unclassified non-coding RNA gene	Chr2:24196442-24215779 (+)

Homology

• Gene Tree
  Gm13562
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086779 (Evidence)
• NCBI Gene
  115489442

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086779	Ensembl Gene Model | MGI Sequence Detail	19308	C57BL/6J
transcript	ENSMUST00000125198	Ensembl | MGI Sequence Detail	797	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;