Gm12850 Pseudogene Detail

Summary

• Symbol
  Gm12850
• Name
  predicted gene 12850

• Feature Type
  pseudogene
• IDs
  MGI:3651240
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:107127631-107128066 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 50.18 cM

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651240	pseudogene	Chr4:107127631-107128066 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012808	pseudogene	Chr4:107953429-107953864 (+)
A/J	MGP_AJ_G0012793	pseudogene	Chr4:104081118-104081553 (+)
AKR/J	MGP_AKRJ_G0012763	pseudogene	Chr4:106632043-106632478 (+)
BALB/cJ	MGP_BALBcJ_G0012774	pseudogene	Chr4:104274096-104274531 (+)
C3H/HeJ	MGP_C3HHeJ_G0012630	pseudogene	Chr4:107378158-107378593 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013104	pseudogene	Chr4:111831953-111832388 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011380	pseudogene	Chr4:99362562-99363161 (+)
CAST/EiJ	MGP_CASTEiJ_G0012382	pseudogene	Chr4:105192696-105193173 (+)
CBA/J	MGP_CBAJ_G0012606	pseudogene	Chr4:115458002-115458437 (+)
DBA/2J	MGP_DBA2J_G0012669	pseudogene	Chr4:103704709-103705144 (+)
FVB/NJ	MGP_FVBNJ_G0012672	pseudogene	Chr4:102572033-102572468 (+)
LP/J	MGP_LPJ_G0012743	pseudogene	Chr4:108143695-108144130 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012682	pseudogene	Chr4:120743718-120744153 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013115	pseudogene	Chr4:106869883-106870318 (+)
PWK/PhJ	MGP_PWKPhJ_G0012205	pseudogene	Chr4:101945960-101947719 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012013	pseudogene	Chr4:104264466-104264902 (+)
WSB/EiJ	MGP_WSBEiJ_G0012410	pseudogene	Chr4:107050895-107051330 (+)

Homology

• Gene Tree
  Gm12850
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12850
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082941 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082941	Ensembl Gene Model | MGI Sequence Detail	436	C57BL/6J
transcript	ENSMUST00000119210	Ensembl | MGI Sequence Detail	436	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;