Gm12694 Gene Detail

Summary

• Symbol
  Gm12694
• Name
  predicted gene 12694

• Feature Type
  lncRNA gene
• IDs
  MGI:3651291
  NCBI Gene: 105244623
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:94900989-94916696 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 43.34 cM

Strain
Comparison

• SNPs within 2kb
  389 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651291	lncRNA gene	Chr4:94867440-94916781 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003917	antisense lncRNA gene	Chr4:95022142-95077886 (+)
A/J	MGP_AJ_G0003897	antisense lncRNA gene	Chr4:91698625-91755593 (+)
AKR/J	MGP_AKRJ_G0003874	antisense lncRNA gene	Chr4:93891651-93951408 (+)
BALB/cJ	MGP_BALBcJ_G0003883	antisense lncRNA gene	Chr4:91941402-91997551 (+)
C3H/HeJ	MGP_C3HHeJ_G0003830	antisense lncRNA gene	Chr4:94712900-94772855 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004031	antisense lncRNA gene	Chr4:98679556-98733315 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003794	antisense lncRNA gene	Chr4:92578565-92629515 (+)
CBA/J	MGP_CBAJ_G0003823	antisense lncRNA gene	Chr4:101669406-101734471 (+)
DBA/2J	MGP_DBA2J_G0003840	antisense lncRNA gene	Chr4:91491919-91547224 (+)
FVB/NJ	MGP_FVBNJ_G0003858	antisense lncRNA gene	Chr4:90360251-90410148 (+)
LP/J	MGP_LPJ_G0003919	antisense lncRNA gene	Chr4:95345610-95403211 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003846	antisense lncRNA gene	Chr4:107443214-107503630 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004026	antisense lncRNA gene	Chr4:94187830-94244542 (+)
PWK/PhJ	MGP_PWKPhJ_G0003749	antisense lncRNA gene	Chr4:89636445-89687904 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003695	antisense lncRNA gene	Chr4:91588762-91640287 (+)
WSB/EiJ	MGP_WSBEiJ_G0003829	antisense lncRNA gene	Chr4:94322685-94375483 (+)

Homology

• Gene Tree
  Gm12694
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12694
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000086251 (Evidence)
• NCBI Gene
  105244623

Representative Sequences			Length	Strain/Species
genomic	105244623	NCBI Gene Model | MGI Sequence Detail	15708	C57BL/6J
transcript	XR_004942103	RefSeq | MGI Sequence Detail	265	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;