Gm12009 Pseudogene Detail

Summary

• Symbol
  Gm12009
• Name
  predicted gene 12009

• Feature Type
  pseudogene
• IDs
  MGI:3651311
  NCBI Gene: 432537
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:14999158-15000257 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 8.62 cM

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651311	pseudogene	Chr11:14999135-15000259 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010594	pseudogene	Chr11:12410950-12412049 (+)
A/J	MGP_AJ_G0010586	pseudogene	Chr11:11977426-11978525 (+)
AKR/J	MGP_AKRJ_G0010547	pseudogene	Chr11:12436900-12437999 (+)
BALB/cJ	MGP_BALBcJ_G0010562	pseudogene	Chr11:12071929-12073028 (+)
C3H/HeJ	MGP_C3HHeJ_G0010483	pseudogene	Chr11:12376527-12377626 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010833	pseudogene	Chr11:12922131-12923230 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010307	pseudogene	Chr11:12360579-12361678 (+)
CBA/J	MGP_CBAJ_G0010455	pseudogene	Chr11:13654129-13655228 (+)
DBA/2J	MGP_DBA2J_G0010486	pseudogene	Chr11:11920330-11921429 (+)
FVB/NJ	MGP_FVBNJ_G0010503	pseudogene	Chr11:11778441-11779540 (+)
LP/J	MGP_LPJ_G0010575	pseudogene	Chr11:12562535-12563634 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010479	pseudogene	Chr11:13950237-13951336 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010810	pseudogene	Chr11:12526975-12528074 (+)
PWK/PhJ	MGP_PWKPhJ_G0010207	pseudogene	Chr11:11979911-11981010 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010020	pseudogene	Chr11:12310914-12312012 (+)
WSB/EiJ	MGP_WSBEiJ_G0010365	pseudogene	Chr11:12191657-12192756 (+)

Homology

• Gene Tree
  Gm12009
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084183 (Evidence)
• NCBI Gene
  432537

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084183	Ensembl Gene Model | MGI Sequence Detail	1100	C57BL/6J
transcript	ENSMUST00000121361	Ensembl | MGI Sequence Detail	1100	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;