Platr12 MGI Mouse Gene Detail - MGI:3651341 - pluripotency associated transcript 12

Symbol

Platr12
Name

pluripotency associated transcript 12
Synonyms

Gm11607

Feature Type

lncRNA gene
IDs

MGI:3651341
Alliance

gene page

Sequence Map

Chr1:63239472-63247126 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 32.31 cM

SNPs within 2kb

226 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651341	lncRNA gene	Chr1:63239472-63247126 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015100	unclassified non-coding RNA gene	Chr1:63343766-63351438 (+)
A/J	MGP_AJ_G0015073	unclassified non-coding RNA gene	Chr1:61100113-61107765 (+)
AKR/J	MGP_AKRJ_G0015036	unclassified non-coding RNA gene	Chr1:62784732-62792386 (+)
BALB/cJ	MGP_BALBcJ_G0015036	unclassified non-coding RNA gene	Chr1:61187904-61195507 (+)
C3H/HeJ	MGP_C3HHeJ_G0014859	unclassified non-coding RNA gene	Chr1:63062247-63069884 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015493	unclassified non-coding RNA gene	Chr1:65783431-65791085 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013239	unclassified non-coding RNA gene	Chr1:57216241-57225379 (+)
CAST/EiJ	MGP_CASTEiJ_G0014414	unclassified non-coding RNA gene	Chr1:62329909-62336266 (+)
CBA/J	MGP_CBAJ_G0014838	unclassified non-coding RNA gene	Chr1:67881364-67888986 (+)
DBA/2J	MGP_DBA2J_G0014931	unclassified non-coding RNA gene	Chr1:60516515-60524140 (+)
FVB/NJ	MGP_FVBNJ_G0014943	unclassified non-coding RNA gene	Chr1:59808441-59816297 (+)
LP/J	MGP_LPJ_G0015014	unclassified non-coding RNA gene	Chr1:64232160-64240261 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014970	unclassified non-coding RNA gene	Chr1:70797782-70805428 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015531	unclassified non-coding RNA gene	Chr1:62766950-62774589 (+)
PWK/PhJ	MGP_PWKPhJ_G0014206	unclassified non-coding RNA gene	Chr1:59884710-59893086 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013995	unclassified non-coding RNA gene	Chr1:62286453-62294291 (+)
WSB/EiJ	MGP_WSBEiJ_G0014518	unclassified non-coding RNA gene	Chr1:62491615-62499259 (+)

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Gene Tree

Platr12

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

2
Chemically induced (other)

1
Radiation induced

1
Genomic Mutations

2 involving Platr12
Find Mice (IMSR)

58 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706

Tissue x Stage Matrix

Other Mouse Links

Expression Atlas

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All Sequences

21

Ensembl

ENSMUSG00000086730 (Evidence)

Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000086730	Ensembl Gene Model \| MGI Sequence Detail	7655	C57BL/6J	± kb
	transcript	ENSMUST00000189722	Ensembl \| MGI Sequence Detail	549	Not Applicable

Summaries

All 8

Gene Ontology 1

Phenotypes 4
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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