Atp5pb-ps Pseudogene Detail

Summary

• Symbol
  Atp5pb-ps
• Name
  ATP synthase peripheral stalk-membrane subunit b, pseudogene
• Synonyms
  Gm12231

• Feature Type
  pseudogene
• IDs
  MGI:3651344
  NCBI Gene: 667832
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:55008927-55009621 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 32.13 cM

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  4

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651344	pseudogene	Chr11:55008820-55009718 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010715	pseudogene	Chr11:54631672-54632764 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0011128	pseudogene	Chr3:150295099-150295819 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0011744	pseudogene	Chr3:157683261-157683992 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Atp5pb-ps
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Atp5pb-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  1

• Ensembl
  ENSMUSG00000044751 (Evidence)
• NCBI Gene
  667832

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000044751	Ensembl Gene Model | MGI Sequence Detail	695	C57BL/6J
transcript	ENSMUST00000119447	Ensembl | MGI Sequence Detail	695	Not Applicable

Other
Accession IDs

MGI:6324354

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:155870 Barlow JL, et al., A p53-dependent mechanism underlies macrocytic anemia in a mouse model of human 5q- syndrome. Nat Med. 2010 Jan;16(1):59-66

TSS for Atp5pb-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108043	Chr11:55009676-55009714 (-)	-74 bp