Gm13006 Pseudogene Detail

Summary

• Symbol
  Gm13006
• Name
  predicted gene 13006

• Feature Type
  pseudogene
• IDs
  MGI:3651355
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:135618575-135618788 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 68.01 cM

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651355	pseudogene	Chr4:135618575-135618788 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012907	pseudogene	Chr4:138382884-138383097 (-)
A/J	MGP_AJ_G0012892	pseudogene	Chr4:132508507-132508720 (-)
AKR/J	MGP_AKRJ_G0012862	pseudogene	Chr4:136330046-136330259 (-)
BALB/cJ	MGP_BALBcJ_G0012868	pseudogene	Chr4:133176052-133176265 (-)
C3H/HeJ	MGP_C3HHeJ_G0012728	pseudogene	Chr4:136614761-136614974 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013209	pseudogene	Chr4:143288285-143288498 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011458	pseudogene	Chr4:125561082-125561296 (-)
CAST/EiJ	MGP_CASTEiJ_G0012473	pseudogene	Chr4:134743238-134743462 (-)
CBA/J	MGP_CBAJ_G0012699	pseudogene	Chr4:147223608-147223821 (-)
DBA/2J	MGP_DBA2J_G0012766	pseudogene	Chr4:132941459-132941672 (-)
FVB/NJ	MGP_FVBNJ_G0012770	pseudogene	Chr4:131859683-131859896 (-)
LP/J	MGP_LPJ_G0012840	pseudogene	Chr4:138479873-138480086 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012784	pseudogene	Chr4:151505073-151505286 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013227	pseudogene	Chr4:136791033-136791246 (-)
PWK/PhJ	MGP_PWKPhJ_G0012295	pseudogene	Chr4:129703091-129703304 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012109	pseudogene	Chr4:132604011-132604226 (-)
WSB/EiJ	MGP_WSBEiJ_G0012501	pseudogene	Chr4:136964787-136965001 (-)

Homology

• Gene Tree
  Gm13006
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm13006
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083430 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083430	Ensembl Gene Model | MGI Sequence Detail	214	C57BL/6J
transcript	ENSMUST00000118683	Ensembl | MGI Sequence Detail	214	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;