Gm12030 Pseudogene Detail

Summary

• Symbol
  Gm12030
• Name
  predicted gene 12030

• Feature Type
  pseudogene
• IDs
  MGI:3651405
  NCBI Gene: 108167861
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:20092568-20092790 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 12.90 cM

Strain
Comparison

• SNPs within 2kb
  170 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651405	pseudogene	Chr11:20092567-20092790 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010612	pseudogene	Chr11:17634391-17634613 (+)
A/J	MGP_AJ_G0010604	pseudogene	Chr11:17052158-17052380 (+)
AKR/J	MGP_AKRJ_G0010566	pseudogene	Chr11:17666504-17666726 (+)
BALB/cJ	MGP_BALBcJ_G0010580	pseudogene	Chr11:17174039-17174261 (+)
C3H/HeJ	MGP_C3HHeJ_G0010500	pseudogene	Chr11:17550489-17550711 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010853	pseudogene	Chr11:18443665-18443887 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009508	pseudogene	Chr11:16058226-16058472 (+)
CAST/EiJ	MGP_CASTEiJ_G0010325	pseudogene	Chr11:17518711-17518930 (+)
CBA/J	MGP_CBAJ_G0010472	pseudogene	Chr11:19251593-19251815 (+)
DBA/2J	MGP_DBA2J_G0010504	pseudogene	Chr11:17008828-17009050 (+)
FVB/NJ	MGP_FVBNJ_G0010520	pseudogene	Chr11:16746141-16746363 (+)
LP/J	MGP_LPJ_G0010592	pseudogene	Chr11:17821261-17821483 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010496	pseudogene	Chr11:19697965-19698187 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010829	pseudogene	Chr11:17740315-17740537 (+)
PWK/PhJ	MGP_PWKPhJ_G0010223	pseudogene	Chr11:17003280-17003502 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010033	pseudogene	Chr11:17456312-17456511 (+)
WSB/EiJ	MGP_WSBEiJ_G0010382	pseudogene	Chr11:17404143-17404365 (+)

Homology

• Gene Tree
  Gm12030
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12030
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000081346 (Evidence)
• NCBI Gene
  108167861

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081346	Ensembl Gene Model | MGI Sequence Detail	223	C57BL/6J
transcript	ENSMUST00000121917	Ensembl | MGI Sequence Detail	223	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12030:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100493	Chr11:20090562-20090584 (+)	-1,995 bp