Gm11893 Pseudogene Detail

Summary

• Symbol
  Gm11893
• Name
  predicted gene 11893

• Feature Type
  pseudogene
• IDs
  MGI:3651418
  NCBI Gene: 625732
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:25541791-25542281 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 10.59 cM

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651418	pseudogene	Chr4:25541662-25542543 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012565	pseudogene	Chr4:22664415-22665723 (-)
A/J	MGP_AJ_G0012556	pseudogene	Chr4:21996122-21996612 (-)
AKR/J	MGP_AKRJ_G0014088	pseudogene	Chr9:55828748-55829223 (-)
BALB/cJ	MGP_BALBcJ_G0012542	pseudogene	Chr4:22054148-22054638 (-)
C3H/HeJ	MGP_C3HHeJ_G0012404	pseudogene	Chr4:22687165-22687655 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012857	pseudogene	Chr4:23658734-23659224 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012399	pseudogene	Chr9:53901072-53901545 (-)
CAST/EiJ	MGP_CASTEiJ_G0013602	pseudogene	Chr9:56381858-56382333 (-)
CBA/J	MGP_CBAJ_G0012382	pseudogene	Chr4:24272280-24272841 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012439	pseudogene	Chr4:21522687-21523176 (-)
LP/J	MGP_LPJ_G0013522	pseudogene	Chr6:87074178-87074673 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012445	pseudogene	Chr4:25805574-25806064 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012857	pseudogene	Chr4:22454348-22455535 (-)
PWK/PhJ	MGP_PWKPhJ_G0011992	pseudogene	Chr4:21588788-21589278 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013205	pseudogene	Chr9:56133177-56133652 (-)
WSB/EiJ	MGP_WSBEiJ_G0013662	pseudogene	Chr9:55777197-55777672 (-)

Homology

• Gene Tree
  Gm11893
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081789 (Evidence)
• NCBI Gene
  625732

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081789	Ensembl Gene Model | MGI Sequence Detail	491	C57BL/6J
transcript	ENSMUST00000117829	Ensembl | MGI Sequence Detail	491	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;