Gm13486 Pseudogene Detail

Summary

• Symbol
  Gm13486
• Name
  predicted gene 13486

• Feature Type
  pseudogene
• IDs
  MGI:3651420
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:50299344-50299625 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 28.96 cM

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651420	pseudogene	Chr2:50299344-50299625 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011626	pseudogene	Chr2:49646722-49647003 (+)
A/J	MGP_AJ_G0011625	pseudogene	Chr2:47750008-47750289 (+)
AKR/J	MGP_AKRJ_G0011590	pseudogene	Chr2:49123755-49124036 (+)
BALB/cJ	MGP_BALBcJ_G0011605	pseudogene	Chr2:47867463-47867744 (+)
C3H/HeJ	MGP_C3HHeJ_G0011491	pseudogene	Chr2:49096304-49096585 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011898	pseudogene	Chr2:51126437-51126718 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010424	pseudogene	Chr2:45780301-45780578 (+)
CAST/EiJ	MGP_CASTEiJ_G0011287	pseudogene	Chr2:49176572-49176850 (+)
CBA/J	MGP_CBAJ_G0011462	pseudogene	Chr2:53037704-53037985 (+)
DBA/2J	MGP_DBA2J_G0011519	pseudogene	Chr2:47369630-47369911 (+)
FVB/NJ	MGP_FVBNJ_G0011520	pseudogene	Chr2:47108199-47108480 (+)
LP/J	MGP_LPJ_G0011584	pseudogene	Chr2:49553953-49554234 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011519	pseudogene	Chr2:54115906-54116187 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011889	pseudogene	Chr2:49016182-49016463 (+)
PWK/PhJ	MGP_PWKPhJ_G0011145	pseudogene	Chr2:47265441-47265719 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010965	pseudogene	Chr2:49195939-49196216 (+)
WSB/EiJ	MGP_WSBEiJ_G0011311	pseudogene	Chr2:49293152-49293433 (+)

Homology

• Gene Tree
  Gm13486
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13486
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082483 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082483	Ensembl Gene Model | MGI Sequence Detail	282	C57BL/6J
transcript	ENSMUST00000119910	Ensembl | MGI Sequence Detail	282	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;