Gm13483 Gene Detail

Summary

• Symbol
  Gm13483
• Name
  predicted gene 13483

• Feature Type
  lncRNA gene
• IDs
  MGI:3651423
  NCBI Gene: 100502624
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr2:50186822-50323979 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 28.92 cM

Strain
Comparison

• SNPs within 2kb
  4439 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651423	lncRNA gene	Chr2:50186822-50323979 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015417	unclassified non-coding RNA gene	Chr2:49526362-49671939 (+)
A/J	MGP_AJ_G0015392	unclassified non-coding RNA gene	Chr2:47634122-47774052 (+)
AKR/J	MGP_AKRJ_G0015356	unclassified non-coding RNA gene	Chr2:49003193-49148029 (+)
BALB/cJ	MGP_BALBcJ_G0015356	unclassified non-coding RNA gene	Chr2:47754278-47892246 (+)
C3H/HeJ	MGP_C3HHeJ_G0015180	unclassified non-coding RNA gene	Chr2:48975194-49121834 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015810	unclassified non-coding RNA gene	Chr2:51007412-51153432 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013550	unclassified non-coding RNA gene	Chr2:45676438-45804458 (+)
CAST/EiJ	MGP_CASTEiJ_G0014731	unclassified non-coding RNA gene	Chr2:49063296-49200905 (+)
CBA/J	MGP_CBAJ_G0015159	unclassified non-coding RNA gene	Chr2:52894132-53065651 (+)
DBA/2J	MGP_DBA2J_G0015254	unclassified non-coding RNA gene	Chr2:47255438-47394467 (+)
FVB/NJ	MGP_FVBNJ_G0015261	unclassified non-coding RNA gene	Chr2:46990881-47132700 (+)
LP/J	MGP_LPJ_G0015334	unclassified non-coding RNA gene	Chr2:49434079-49577730 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015287	unclassified non-coding RNA gene	Chr2:53957319-54146808 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015849	unclassified non-coding RNA gene	Chr2:48900011-49045060 (+)
PWK/PhJ	MGP_PWKPhJ_G0014519	unclassified non-coding RNA gene	Chr2:47148261-47290751 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014307	unclassified non-coding RNA gene	Chr2:49076252-49222094 (+)
WSB/EiJ	MGP_WSBEiJ_G0014838	unclassified non-coding RNA gene	Chr2:49170050-49321222 (+)

Homology

• Gene Tree
  Gm13483
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13483
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000085862 (Evidence)
• NCBI Gene
  100502624

Representative Sequences			Length	Strain/Species
genomic	100502624	NCBI Gene Model | MGI Sequence Detail	137158	C57BL/6J
transcript	NR_040361	RefSeq | MGI Sequence Detail	1160	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm13483:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17695	Chr2:50186906-50186922 (+)	92 bp
Tssr17696	Chr2:50187045-50187048 (+)	225 bp
Tssr17697	Chr2:50193287-50193304 (+)	6,474 bp
Tssr17698	Chr2:50225626-50225630 (+)	38,806 bp