Gm13523 Gene Detail

Summary

• Symbol
  Gm13523
• Name
  predicted gene 13523

• Feature Type
  lncRNA gene
• IDs
  MGI:3651426
  NCBI Gene: 115489514
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:32763333-32766090 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 22.09 cM

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651426	lncRNA gene	Chr2:32763333-32772884 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003546	antisense lncRNA gene	Chr2:31375110-31377356 (-)
A/J	MGP_AJ_G0003526	antisense lncRNA gene	Chr2:30031365-30033611 (-)
AKR/J	MGP_AKRJ_G0003505	antisense lncRNA gene	Chr2:31110335-31112581 (-)
BALB/cJ	MGP_BALBcJ_G0003515	antisense lncRNA gene	Chr2:30151368-30153614 (-)
C3H/HeJ	MGP_C3HHeJ_G0003463	antisense lncRNA gene	Chr2:30991579-30993825 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003653	antisense lncRNA gene	Chr2:32319066-32321312 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003163	antisense lncRNA gene	Chr2:28756828-28759118 (-)
CAST/EiJ	MGP_CASTEiJ_G0003426	antisense lncRNA gene	Chr2:30950815-30953063 (-)
CBA/J	MGP_CBAJ_G0003460	antisense lncRNA gene	Chr2:33555895-33558141 (-)
DBA/2J	MGP_DBA2J_G0003468	antisense lncRNA gene	Chr2:29795742-29797988 (-)
FVB/NJ	MGP_FVBNJ_G0003487	antisense lncRNA gene	Chr2:29683344-29685590 (-)
LP/J	MGP_LPJ_G0003541	antisense lncRNA gene	Chr2:31252082-31254328 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003475	antisense lncRNA gene	Chr2:33156545-33158791 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003656	antisense lncRNA gene	Chr2:30981392-30983619 (-)
PWK/PhJ	MGP_PWKPhJ_G0003381	antisense lncRNA gene	Chr2:29705550-29707801 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003326	antisense lncRNA gene	Chr2:31138288-31140539 (-)
WSB/EiJ	MGP_WSBEiJ_G0003461	antisense lncRNA gene	Chr2:31169636-31171882 (-)

Homology

• Gene Tree
  Gm13523
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  3

• Ensembl
  ENSMUSG00000087496 (Evidence)
• NCBI Gene
  115489514

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087496	Ensembl Gene Model | MGI Sequence Detail	2758	C57BL/6J
transcript	ENSMUST00000151820	Ensembl | MGI Sequence Detail	999	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13523:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23572	Chr2:32766042-32766071 (-)	33 bp