Gm13745 Pseudogene Detail

Summary

• Symbol
  Gm13745
• Name
  predicted gene 13745

• Feature Type
  pseudogene
• IDs
  MGI:3651459
  NCBI Gene: 100417814
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:87702025-87702551 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.98 cM

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651459	pseudogene	Chr2:87701655-87702743 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011757	pseudogene	Chr2:88943935-88944461 (+)
A/J	MGP_AJ_G0011751	pseudogene	Chr2:85419388-85419914 (+)
AKR/J	MGP_AKRJ_G0011718	pseudogene	Chr2:87760756-87761282 (+)
BALB/cJ	MGP_BALBcJ_G0011730	pseudogene	Chr2:85607755-85608281 (+)
C3H/HeJ	MGP_C3HHeJ_G0011615	pseudogene	Chr2:87973247-87973773 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012027	pseudogene	Chr2:91907996-91908522 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010528	pseudogene	Chr2:82095685-82096211 (+)
CAST/EiJ	MGP_CASTEiJ_G0011403	pseudogene	Chr2:88424331-88424857 (+)
CBA/J	MGP_CBAJ_G0011590	pseudogene	Chr2:94987803-94988329 (+)
DBA/2J	MGP_DBA2J_G0011641	pseudogene	Chr2:84974330-84974856 (+)
FVB/NJ	MGP_FVBNJ_G0011647	pseudogene	Chr2:84088163-84088689 (+)
LP/J	MGP_LPJ_G0011712	pseudogene	Chr2:89019675-89020201 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011648	pseudogene	Chr2:97874852-97875378 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012023	pseudogene	Chr2:87883081-87883607 (+)
PWK/PhJ	MGP_PWKPhJ_G0011255	pseudogene	Chr2:84899550-84900076 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011079	pseudogene	Chr2:87799699-87800225 (+)
WSB/EiJ	MGP_WSBEiJ_G0011429	pseudogene	Chr2:88570109-88570635 (+)

Homology

• Gene Tree
  Gm13745
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13745
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082056 (Evidence)
• NCBI Gene
  100417814

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082056	Ensembl Gene Model | MGI Sequence Detail	527	C57BL/6J
transcript	ENSMUST00000121994	Ensembl | MGI Sequence Detail	527	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087