Gm12846 Pseudogene Detail

Summary

• Symbol
  Gm12846
• Name
  predicted gene 12846

• Feature Type
  pseudogene
• IDs
  MGI:3651461
  NCBI Gene: 100417687
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:98552603-98554374 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.60 cM

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651461	pseudogene	Chr4:98552587-98554566 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012779	pseudogene	Chr4:98829616-98832262 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013076	pseudogene	Chr4:102600288-102602683 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011359	pseudogene	Chr4:90778592-90779983 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012716	pseudogene	Chr4:99137072-99139787 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013084	pseudogene	Chr4:97953673-97957248 (+)
PWK/PhJ	MGP_PWKPhJ_G0013267	pseudogene	Chr7:97497518-97498893 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12846
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12846
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000081046 (Evidence)
• NCBI Gene
  100417687

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081046	Ensembl Gene Model | MGI Sequence Detail	1772	C57BL/6J
transcript	ENSMUST00000120431	Ensembl | MGI Sequence Detail	1373	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;