Gm12000 Gene Detail

Summary

• Symbol
  Gm12000
• Name
  predicted gene 12000

• Feature Type
  lncRNA gene
• IDs
  MGI:3651524
  NCBI Gene: 100038572
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:11645133-11646439 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 7.03 cM

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651524	lncRNA gene	Chr11:11645133-11646439 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002920	antisense lncRNA gene	Chr11:8984096-8985402 (-)
A/J	MGP_AJ_G0002897	antisense lncRNA gene	Chr11:8668496-8669802 (-)
AKR/J	MGP_AKRJ_G0002878	antisense lncRNA gene	Chr11:9036760-9038066 (-)
BALB/cJ	MGP_BALBcJ_G0002885	antisense lncRNA gene	Chr11:8690648-8691954 (-)
C3H/HeJ	MGP_C3HHeJ_G0002840	antisense lncRNA gene	Chr11:8938759-8940065 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003027	antisense lncRNA gene	Chr11:9290593-9291899 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002569	antisense lncRNA gene	Chr11:8211447-8212811 (-)
CAST/EiJ	MGP_CASTEiJ_G0002812	antisense lncRNA gene	Chr11:8942094-8943467 (-)
CBA/J	MGP_CBAJ_G0002837	antisense lncRNA gene	Chr11:9964752-9966058 (-)
DBA/2J	MGP_DBA2J_G0002844	antisense lncRNA gene	Chr11:8603375-8604681 (-)
FVB/NJ	MGP_FVBNJ_G0002863	antisense lncRNA gene	Chr11:8513946-8515252 (-)
LP/J	MGP_LPJ_G0002919	antisense lncRNA gene	Chr11:9092591-9093897 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002851	antisense lncRNA gene	Chr11:9684562-9685868 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003030	antisense lncRNA gene	Chr11:9055695-9057001 (-)
PWK/PhJ	MGP_PWKPhJ_G0002770	antisense lncRNA gene	Chr11:8634600-8635976 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002719	antisense lncRNA gene	Chr11:8897944-8899315 (-)
WSB/EiJ	MGP_WSBEiJ_G0002841	antisense lncRNA gene	Chr11:8817908-8819214 (-)

Homology

• Gene Tree
  Gm12000
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073145 (Evidence)
• NCBI Gene
  100038572

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073145	Ensembl Gene Model | MGI Sequence Detail	1307	C57BL/6J
transcript	ENSMUST00000132007	Ensembl | MGI Sequence Detail	629	Not Applicable
polypeptide	Q3UW08	UniProt | EBI | MGI Sequence Detail	184	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;