Gm12926 Pseudogene Detail

Summary

• Symbol
  Gm12926
• Name
  predicted gene 12926

• Feature Type
  pseudogene
• IDs
  MGI:3651535
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:123524088-123524496 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.42 cM

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651535	pseudogene	Chr4:123524088-123524496 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012869	pseudogene	Chr4:125096472-125096880 (+)
A/J	MGP_AJ_G0012854	pseudogene	Chr4:120225357-120225765 (+)
AKR/J	MGP_AKRJ_G0012824	pseudogene	Chr4:123476364-123476772 (+)
BALB/cJ	MGP_BALBcJ_G0012833	pseudogene	Chr4:120781063-120781471 (+)
C3H/HeJ	MGP_C3HHeJ_G0012691	pseudogene	Chr4:123576129-123576537 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013174	pseudogene	Chr4:129914859-129915267 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011420	pseudogene	Chr4:113413324-113413728 (+)
CAST/EiJ	MGP_CASTEiJ_G0012439	pseudogene	Chr4:121600706-121601114 (+)
CBA/J	MGP_CBAJ_G0012666	pseudogene	Chr4:133210405-133210813 (+)
DBA/2J	MGP_DBA2J_G0012728	pseudogene	Chr4:120701737-120702145 (+)
FVB/NJ	MGP_FVBNJ_G0012732	pseudogene	Chr4:119328377-119328785 (+)
LP/J	MGP_LPJ_G0012804	pseudogene	Chr4:125371519-125371927 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012744	pseudogene	Chr4:138147117-138147525 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013186	pseudogene	Chr4:123847189-123847597 (+)
PWK/PhJ	MGP_PWKPhJ_G0012260	pseudogene	Chr4:117098211-117098619 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012069	pseudogene	Chr4:119644744-119645124 (+)
WSB/EiJ	MGP_WSBEiJ_G0012467	pseudogene	Chr4:123915822-123916230 (+)

Homology

• Gene Tree
  Gm12926
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Gene trapped
  5
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12926
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081585 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081585	Ensembl Gene Model | MGI Sequence Detail	409	C57BL/6J
transcript	ENSMUST00000121158	Ensembl | MGI Sequence Detail	409	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm12926:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38864	Chr4:123524044-123524049 (+)	-41 bp