Gm12925 Gene Detail

Summary

• Symbol
  Gm12925
• Name
  predicted gene 12925

• Feature Type
  lncRNA gene
• IDs
  MGI:3651536
  NCBI Gene: 102633214
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:123559674-123565003 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.42 cM

Strain
Comparison

• SNPs within 2kb
  203 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651536	lncRNA gene	Chr4:123559674-123565010 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003952	antisense lncRNA gene	Chr4:125135420-125140741 (+)
A/J	MGP_AJ_G0003933	antisense lncRNA gene	Chr4:120262535-120267879 (+)
AKR/J	MGP_AKRJ_G0003910	antisense lncRNA gene	Chr4:123515307-123521504 (+)
BALB/cJ	MGP_BALBcJ_G0003919	antisense lncRNA gene	Chr4:120816760-120822110 (+)
C3H/HeJ	MGP_C3HHeJ_G0003866	antisense lncRNA gene	Chr4:123613023-123618355 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004067	antisense lncRNA gene	Chr4:129953263-129958599 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003555	antisense lncRNA gene	Chr4:113450760-113456006 (+)
CAST/EiJ	MGP_CASTEiJ_G0003829	antisense lncRNA gene	Chr4:121638406-121643740 (+)
CBA/J	MGP_CBAJ_G0003859	antisense lncRNA gene	Chr4:133246112-133251438 (+)
DBA/2J	MGP_DBA2J_G0003875	antisense lncRNA gene	Chr4:120737615-120742965 (+)
FVB/NJ	MGP_FVBNJ_G0003894	antisense lncRNA gene	Chr4:119365746-119371102 (+)
LP/J	MGP_LPJ_G0003955	antisense lncRNA gene	Chr4:125410383-125415727 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003882	antisense lncRNA gene	Chr4:138198037-138203389 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004062	antisense lncRNA gene	Chr4:123887401-123892578 (+)
PWK/PhJ	MGP_PWKPhJ_G0003783	antisense lncRNA gene	Chr4:117135189-117140618 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003729	antisense lncRNA gene	Chr4:119681558-119686886 (+)
WSB/EiJ	MGP_WSBEiJ_G0003865	antisense lncRNA gene	Chr4:123954074-123959412 (+)

Homology

• Gene Tree
  Gm12925
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  65
• Chemically induced (other)
  2
• Gene trapped
  61
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12925
• Find Mice (IMSR)
  32 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000087307 (Evidence)
• NCBI Gene
  102633214

Representative Sequences			Length	Strain/Species
genomic	102633214	NCBI Gene Model | MGI Sequence Detail	5330	C57BL/6J
transcript	NR_136925	RefSeq | MGI Sequence Detail	945	ZRU/MplStud

References

• Summaries
  All 17

  Phenotypes 11
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12925:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38865	Chr4:123558601-123558625 (+)	-1,061 bp