Gm12527 Pseudogene Detail

Summary

• Symbol
  Gm12527
• Name
  predicted gene 12527

• Feature Type
  pseudogene
• IDs
  MGI:3651542
  NCBI Gene: 666719
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:59368303-59368866 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 32.53 cM

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651542	pseudogene	Chr4:59368106-59368866 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012681	pseudogene	Chr4:58265742-58266461 (-)
A/J	MGP_AJ_G0012669	pseudogene	Chr4:56026321-56027040 (-)
AKR/J	MGP_AKRJ_G0012639	pseudogene	Chr4:57591559-57592278 (-)
BALB/cJ	MGP_BALBcJ_G0012652	pseudogene	Chr4:56200677-56201396 (-)
C3H/HeJ	MGP_C3HHeJ_G0012511	pseudogene	Chr4:58130554-58131273 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012980	pseudogene	Chr4:60307241-60307804 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011283	pseudogene	Chr4:52759902-52760458 (-)
CAST/EiJ	MGP_CASTEiJ_G0012267	pseudogene	Chr4:57844454-57845017 (-)
CBA/J	MGP_CBAJ_G0012490	pseudogene	Chr4:62349980-62350699 (-)
DBA/2J	MGP_DBA2J_G0012549	pseudogene	Chr4:55927802-55928521 (-)
FVB/NJ	MGP_FVBNJ_G0012550	pseudogene	Chr4:55135933-55136652 (-)
LP/J	MGP_LPJ_G0012621	pseudogene	Chr4:58360458-58361177 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012558	pseudogene	Chr4:65472205-65472924 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012983	pseudogene	Chr4:57779491-57780210 (-)
PWK/PhJ	MGP_PWKPhJ_G0012094	pseudogene	Chr4:55959374-55959931 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011907	pseudogene	Chr4:57095623-57096172 (-)
WSB/EiJ	MGP_WSBEiJ_G0012289	pseudogene	Chr4:57759420-57760139 (-)

Homology

• Gene Tree
  Gm12527
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083979 (Evidence)
• NCBI Gene
  666719

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083979	Ensembl Gene Model | MGI Sequence Detail	564	C57BL/6J
transcript	ENSMUST00000117967	Ensembl | MGI Sequence Detail	564	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;