Gm12529 Pseudogene Detail

Summary

• Symbol
  Gm12529
• Name
  predicted gene 12529

• Feature Type
  pseudogene
• IDs
  MGI:3651544
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:59532747-59533014 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 32.63 cM

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651544	pseudogene	Chr4:59532747-59533014 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012682	pseudogene	Chr4:58436924-58437191 (+)
A/J	MGP_AJ_G0012670	pseudogene	Chr4:56192705-56192972 (+)
AKR/J	MGP_AKRJ_G0012640	pseudogene	Chr4:57762605-57762872 (+)
BALB/cJ	MGP_BALBcJ_G0012653	pseudogene	Chr4:56367575-56367842 (+)
C3H/HeJ	MGP_C3HHeJ_G0012512	pseudogene	Chr4:58301124-58301391 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012981	pseudogene	Chr4:60476474-60476741 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011284	pseudogene	Chr4:52925519-52925786 (+)
CAST/EiJ	MGP_CASTEiJ_G0012268	pseudogene	Chr4:58021010-58021277 (+)
CBA/J	MGP_CBAJ_G0012491	pseudogene	Chr4:62533002-62533269 (+)
DBA/2J	MGP_DBA2J_G0012550	pseudogene	Chr4:56093227-56093494 (+)
FVB/NJ	MGP_FVBNJ_G0012551	pseudogene	Chr4:55300461-55300728 (+)
LP/J	MGP_LPJ_G0012622	pseudogene	Chr4:58532863-58533130 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012559	pseudogene	Chr4:65652404-65652671 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012984	pseudogene	Chr4:57950045-57950312 (+)
PWK/PhJ	MGP_PWKPhJ_G0012095	pseudogene	Chr4:56129639-56129906 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011908	pseudogene	Chr4:57277197-57277464 (+)
WSB/EiJ	MGP_WSBEiJ_G0012290	pseudogene	Chr4:57934565-57934832 (+)

Homology

• Gene Tree
  Gm12529
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000080831 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080831	Ensembl Gene Model | MGI Sequence Detail	268	C57BL/6J
transcript	ENSMUST00000119529	Ensembl | MGI Sequence Detail	268	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;