Gm12236 Gene Detail

Summary

• Symbol
  Gm12236
• Name
  predicted gene 12236

• Feature Type
  lncRNA gene
• IDs
  MGI:3651548
  NCBI Gene: 108167901
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:55405672-55418541 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 33.12 cM

Strain
Comparison

• SNPs within 2kb
  570 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651548	lncRNA gene	Chr11:55405672-55427119 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002964	antisense lncRNA gene	Chr11:55053202-55066931 (+)
A/J	MGP_AJ_G0002941	antisense lncRNA gene	Chr11:53003887-53016957 (+)
AKR/J	MGP_AKRJ_G0002922	antisense lncRNA gene	Chr11:54730103-54744621 (+)
BALB/cJ	MGP_BALBcJ_G0002929	antisense lncRNA gene	Chr11:53332685-53346064 (+)
C3H/HeJ	MGP_C3HHeJ_G0002884	antisense lncRNA gene	Chr11:54665014-54678593 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003070	antisense lncRNA gene	Chr11:56715996-56729734 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002613	antisense lncRNA gene	Chr11:50415948-50430566 (+)
CAST/EiJ	MGP_CASTEiJ_G0002855	antisense lncRNA gene	Chr11:54710301-54726100 (+)
CBA/J	MGP_CBAJ_G0002881	antisense lncRNA gene	Chr11:59415430-59433673 (+)
DBA/2J	MGP_DBA2J_G0002888	antisense lncRNA gene	Chr11:52682737-52696304 (+)
FVB/NJ	MGP_FVBNJ_G0002906	antisense lncRNA gene	Chr11:52351547-52364591 (+)
LP/J	MGP_LPJ_G0002963	antisense lncRNA gene	Chr11:55511678-55525427 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002894	antisense lncRNA gene	Chr11:60586450-60598981 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003074	antisense lncRNA gene	Chr11:54758347-54772254 (+)
PWK/PhJ	MGP_PWKPhJ_G0002813	antisense lncRNA gene	Chr11:53259101-53274271 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002762	antisense lncRNA gene	Chr11:54544358-54560043 (+)
WSB/EiJ	MGP_WSBEiJ_G0002884	antisense lncRNA gene	Chr11:54398432-54412563 (+)

Homology

• Gene Tree
  Gm12236
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm12236
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  5

• Ensembl
  ENSMUSG00000086460 (Evidence)
• NCBI Gene
  108167901

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086460	Ensembl Gene Model | MGI Sequence Detail	12870	C57BL/6J
transcript	ENSMUST00000152968	Ensembl | MGI Sequence Detail	250	Not Applicable

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:155870 Barlow JL, et al., A p53-dependent mechanism underlies macrocytic anemia in a mouse model of human 5q- syndrome. Nat Med. 2010 Jan;16(1):59-66