Gm12238 Gene Detail

Summary

• Symbol
  Gm12238
• Name
  predicted gene 12238

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3651550
  NCBI Gene: 100303747
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:55373532-55373655 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 33.10 cM

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651550	lncRNA gene	Chr11:55373532-55373655 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036892	sense intronic lncRNA gene	Chr11:55020765-55020888 (+)
A/J	MGP_AJ_G0036880	sense intronic lncRNA gene	Chr11:52970506-52970629 (+)
AKR/J	MGP_AKRJ_G0036827	sense intronic lncRNA gene	Chr11:54697968-54698091 (+)
BALB/cJ	MGP_BALBcJ_G0036871	sense intronic lncRNA gene	Chr11:53299351-53299474 (+)
C3H/HeJ	MGP_C3HHeJ_G0036556	sense intronic lncRNA gene	Chr11:54629524-54629647 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037384	sense intronic lncRNA gene	Chr11:56683542-56683665 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034444	sense intronic lncRNA gene	Chr11:50383598-50383721 (+)
CAST/EiJ	MGP_CASTEiJ_G0035745	sense intronic lncRNA gene	Chr11:54671731-54671854 (+)
CBA/J	MGP_CBAJ_G0036531	sense intronic lncRNA gene	Chr11:59383204-59383327 (+)
DBA/2J	MGP_DBA2J_G0036708	sense intronic lncRNA gene	Chr11:52650586-52650709 (+)
FVB/NJ	MGP_FVBNJ_G0036659	sense intronic lncRNA gene	Chr11:52319502-52319625 (+)
LP/J	MGP_LPJ_G0036754	sense intronic lncRNA gene	Chr11:55479553-55479676 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036665	sense intronic lncRNA gene	Chr11:60554567-60554690 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037500	sense intronic lncRNA gene	Chr11:54726343-54726466 (+)
PWK/PhJ	MGP_PWKPhJ_G0035439	sense intronic lncRNA gene	Chr11:53226240-53226363 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035250	sense intronic lncRNA gene	Chr11:54509941-54510064 (+)
WSB/EiJ	MGP_WSBEiJ_G0035945	sense intronic lncRNA gene	Chr11:54360459-54360582 (+)

Homology

• Gene Tree
  Gm12238
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm12238
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000087342 (Evidence)
• NCBI Gene
  100303747

Representative Sequences			Length	Strain/Species
genomic	100303747	NCBI Gene Model | MGI Sequence Detail	124	C57BL/6J
transcript	NR_028480	RefSeq | MGI Sequence Detail	124	Not Specified

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:155870 Barlow JL, et al., A p53-dependent mechanism underlies macrocytic anemia in a mouse model of human 5q- syndrome. Nat Med. 2010 Jan;16(1):59-66