Gm13665 Pseudogene Detail

Summary

• Symbol
  Gm13665
• Name
  predicted gene 13665

• Feature Type
  pseudogene
• IDs
  MGI:3651571
  NCBI Gene: 100416286
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:72947092-72947619 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.37 cM

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651571	pseudogene	Chr2:72947057-72947652 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011697	pseudogene	Chr2:73376850-73377371 (+)
A/J	MGP_AJ_G0011693	pseudogene	Chr2:70484617-70485124 (+)
AKR/J	MGP_AKRJ_G0011659	pseudogene	Chr2:72431702-72432166 (+)
BALB/cJ	MGP_BALBcJ_G0011674	pseudogene	Chr2:70683405-70683896 (+)
C3H/HeJ	MGP_C3HHeJ_G0011560	pseudogene	Chr2:72614181-72614671 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011968	pseudogene	Chr2:75558889-75559385 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011347	pseudogene	Chr2:72870775-72871296 (+)
CBA/J	MGP_CBAJ_G0011533	pseudogene	Chr2:78328987-78329477 (+)
DBA/2J	MGP_DBA2J_G0011585	pseudogene	Chr2:70092105-70092605 (+)
FVB/NJ	MGP_FVBNJ_G0011590	pseudogene	Chr2:69508275-69508789 (+)
LP/J	MGP_LPJ_G0011653	pseudogene	Chr2:73254915-73255436 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011590	pseudogene	Chr2:80267915-80268429 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011961	pseudogene	Chr2:72512939-72513460 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13665
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Targeted
  5
• Genomic Mutations
  6 involving Gm13665
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000082455 (Evidence)
• NCBI Gene
  100416286

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082455	Ensembl Gene Model | MGI Sequence Detail	528	C57BL/6J
transcript	ENSMUST00000120830	Ensembl | MGI Sequence Detail	528	Not Applicable

References

• Summaries
  All 18

  Phenotypes 13
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729