Gm14204 MGI Mouse Gene Detail - MGI:3651576

Symbol

Gm14204
Name

predicted gene 14204

Feature Type

lncRNA gene
IDs

MGI:3651576
NCBI Gene: 100045469
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr2:158437392-158452643 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 2, 78.72 cM

SNPs within 2kb

577 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651576	lncRNA gene	Chr2:158437388-158452643 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015485	unclassified non-coding RNA gene	Chr2:163675576-163694700 (-)
A/J	MGP_AJ_G0015462	unclassified non-coding RNA gene	Chr2:157112596-157127704 (-)
AKR/J	MGP_AKRJ_G0015426	unclassified non-coding RNA gene	Chr2:161738053-161753078 (-)
BALB/cJ	MGP_BALBcJ_G0015425	unclassified non-coding RNA gene	Chr2:157420840-157437216 (-)
C3H/HeJ	MGP_C3HHeJ_G0015248	unclassified non-coding RNA gene	Chr2:162089488-162104987 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015879	unclassified non-coding RNA gene	Chr2:168555580-168571685 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013617	unclassified non-coding RNA gene	Chr2:150552185-150567836 (-)
CAST/EiJ	MGP_CASTEiJ_G0014800	unclassified non-coding RNA gene	Chr2:162432194-162450261 (-)
CBA/J	MGP_CBAJ_G0015229	unclassified non-coding RNA gene	Chr2:174590967-174611461 (-)
DBA/2J	MGP_DBA2J_G0015323	unclassified non-coding RNA gene	Chr2:156287428-156303433 (-)
FVB/NJ	MGP_FVBNJ_G0015330	unclassified non-coding RNA gene	Chr2:154703863-154720260 (-)
LP/J	MGP_LPJ_G0015401	unclassified non-coding RNA gene	Chr2:163769641-163787819 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015354	unclassified non-coding RNA gene	Chr2:178378958-178395158 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015919	unclassified non-coding RNA gene	Chr2:161570687-161588990 (-)
PWK/PhJ	MGP_PWKPhJ_G0014588	unclassified non-coding RNA gene	Chr2:155824837-155840374 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014376	unclassified non-coding RNA gene	Chr2:160497676-160512828 (-)
WSB/EiJ	MGP_WSBEiJ_G0014907	unclassified non-coding RNA gene	Chr2:162466483-162481640 (-)

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Gene Tree

Gm14204

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

2
Gene trapped

2
Find Mice (IMSR)

0 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

4

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

33
RefSeq

2

Ensembl

ENSMUSG00000086496 (Evidence)
NCBI Gene

100045469

Representative Sequences				Length	Strain/Species	Flank
	genomic	100045469	NCBI Gene Model \| MGI Sequence Detail	15252	C57BL/6J	± kb
	transcript	NR_040358	RefSeq \| MGI Sequence Detail	5401	C57BL/6

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All nucleic 4

cDNA 4

Microarray probesets 2

Summaries

All 12

Phenotypes 2
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm14204:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27233	Chr2:158452577-158452585 (-)	62 bp
Tssr27232	Chr2:158452548-158452568 (-)	85 bp
Tssr27231	Chr2:158452511-158452535 (-)	120 bp
Tssr27230	Chr2:158452486-158452500 (-)	150 bp
Tssr27229	Chr2:158448555-158448559 (-)	4,086 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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