Gm13666 Pseudogene Detail

Summary

• Symbol
  Gm13666
• Name
  predicted gene 13666

• Feature Type
  pseudogene
• IDs
  MGI:3651577
  NCBI Gene: 620110
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:72962089-72962887 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.38 cM

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651577	pseudogene	Chr2:72962070-72962929 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011698	pseudogene	Chr2:73393198-73396341 (+)
A/J	MGP_AJ_G0011694	pseudogene	Chr2:70499842-70500640 (+)
AKR/J	MGP_AKRJ_G0011660	pseudogene	Chr2:72446607-72448324 (+)
BALB/cJ	MGP_BALBcJ_G0011675	pseudogene	Chr2:70698356-70699154 (+)
C3H/HeJ	MGP_C3HHeJ_G0011561	pseudogene	Chr2:72629102-72629900 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011969	pseudogene	Chr2:75577786-75579744 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010479	pseudogene	Chr2:67715252-67716037 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011534	pseudogene	Chr2:78346412-78347210 (+)
DBA/2J	MGP_DBA2J_G0011586	pseudogene	Chr2:70107104-70107902 (+)
FVB/NJ	MGP_FVBNJ_G0011591	pseudogene	Chr2:69523245-69524043 (+)
LP/J	MGP_LPJ_G0011654	pseudogene	Chr2:73272001-73272799 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011591	pseudogene	Chr2:80283632-80284430 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011962	pseudogene	Chr2:72527876-72529443 (+)
PWK/PhJ	MGP_PWKPhJ_G0011204	pseudogene	Chr2:70025182-70026082 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011027	pseudogene	Chr2:72762729-72763527 (+)
WSB/EiJ	MGP_WSBEiJ_G0011375	pseudogene	Chr2:72973770-72974549 (+)

Homology

• Gene Tree
  Gm13666
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Targeted
  5
• Genomic Mutations
  6 involving Gm13666
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000083569 (Evidence)
• NCBI Gene
  620110

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083569	Ensembl Gene Model | MGI Sequence Detail	799	C57BL/6J
transcript	ENSMUST00000120032	Ensembl | MGI Sequence Detail	799	Not Applicable

References

• Summaries
  All 18

  Phenotypes 13
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729