Gm13409 Pseudogene Detail

Summary

• Symbol
  Gm13409
• Name
  predicted gene 13409

• Feature Type
  pseudogene
• IDs
  MGI:3651609
  NCBI Gene: 620156
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:24151842-24156350 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 16.30 cM

Strain
Comparison

• SNPs within 2kb
  266 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651609	pseudogene	Chr2:24151669-24157463 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040215	pseudogene	Chr2:22049088-22060897 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0040133	pseudogene	Chr2:21781799-21797723 (+)
BALB/cJ	MGP_BALBcJ_G0040200	pseudogene	Chr2:21319640-21321628 (-)
C3H/HeJ	MGP_C3HHeJ_G0039839	pseudogene	Chr2:21866828-21871436 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038925	pseudogene	Chr2:21700273-21709072 (-)
CBA/J	MGP_CBAJ_G0039807	pseudogene	Chr2:23565381-23568941 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0039957	pseudogene	Chr2:20806171-20810054 (-)
LP/J	MGP_LPJ_G0040045	pseudogene	Chr2:21989627-21995447 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039953	pseudogene	Chr2:23794964-23799825 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040886	pseudogene	Chr2:21728870-21737430 (+)
PWK/PhJ	MGP_PWKPhJ_G0038616	pseudogene	Chr2:20751044-20853181 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13409
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000083172 (Evidence)
• NCBI Gene
  620156

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083172	Ensembl Gene Model | MGI Sequence Detail	4509	C57BL/6J
transcript	ENSMUST00000122072	Ensembl | MGI Sequence Detail	546	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;