Gm13919 Gene Detail

Summary

• Symbol
  Gm13919
• Name
  predicted gene 13919

• Feature Type
  lncRNA gene
• IDs
  MGI:3651616
  NCBI Gene: 102643083
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:101887816-101898324 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 54.13 cM

Strain
Comparison

• SNPs within 2kb
  539 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651616	lncRNA gene	Chr2:101869968-101898324 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003605	antisense lncRNA gene	Chr2:103925001-103956453 (+)
A/J	MGP_AJ_G0003587	antisense lncRNA gene	Chr2:99647692-99650327 (+)
AKR/J	MGP_AKRJ_G0003565	antisense lncRNA gene	Chr2:102360036-102387195 (+)
BALB/cJ	MGP_BALBcJ_G0003576	antisense lncRNA gene	Chr2:99944380-99947004 (+)
C3H/HeJ	MGP_C3HHeJ_G0003523	antisense lncRNA gene	Chr2:102728086-102755913 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003714	antisense lncRNA gene	Chr2:107437016-107465334 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003223	antisense lncRNA gene	Chr2:95351071-95378278 (+)
CAST/EiJ	MGP_CASTEiJ_G0003486	antisense lncRNA gene	Chr2:103145709-103174709 (+)
CBA/J	MGP_CBAJ_G0003520	antisense lncRNA gene	Chr2:111144700-111172460 (+)
DBA/2J	MGP_DBA2J_G0003528	antisense lncRNA gene	Chr2:99232710-99259856 (+)
FVB/NJ	MGP_FVBNJ_G0003548	antisense lncRNA gene	Chr2:98228771-98231724 (+)
LP/J	MGP_LPJ_G0003605	antisense lncRNA gene	Chr2:104097002-104125115 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003536	antisense lncRNA gene	Chr2:115123747-115153043 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003716	antisense lncRNA gene	Chr2:102568439-102595239 (+)
PWK/PhJ	MGP_PWKPhJ_G0003441	antisense lncRNA gene	Chr2:98706677-98734486 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003385	antisense lncRNA gene	Chr2:101778119-101780744 (+)
WSB/EiJ	MGP_WSBEiJ_G0003520	antisense lncRNA gene	Chr2:103274631-103302013 (+)

Homology

• Gene Tree
  Gm13919
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm13919
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000085417 (Evidence)
• NCBI Gene
  102643083

Representative Sequences			Length	Strain/Species
genomic	102643083	NCBI Gene Model | MGI Sequence Detail	10509	C57BL/6J
transcript	AK079670	GenBank | ENA | DDBJ | MGI Sequence Detail	2017	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087