Gm13561 Gene Detail

Summary

• Symbol
  Gm13561
• Name
  predicted gene 13561

• Feature Type
  lncRNA gene
• IDs
  MGI:3651674
  NCBI Gene: 102637074
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:62285461-62299261 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 35.85 cM

Strain
Comparison

• SNPs within 2kb
  386 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651674	lncRNA gene	Chr2:62187415-62301257 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003568	antisense lncRNA gene	Chr2:62037298-62155106 (+)
A/J	MGP_AJ_G0003548	antisense lncRNA gene	Chr2:59663701-59777162 (+)
AKR/J	MGP_AKRJ_G0003527	antisense lncRNA gene	Chr2:61262338-61376692 (+)
BALB/cJ	MGP_BALBcJ_G0003537	antisense lncRNA gene	Chr2:59768761-59885534 (+)
C3H/HeJ	MGP_C3HHeJ_G0003485	antisense lncRNA gene	Chr2:61370158-61485723 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003675	antisense lncRNA gene	Chr2:63863349-63979646 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003185	antisense lncRNA gene	Chr2:57183619-57296462 (+)
CAST/EiJ	MGP_CASTEiJ_G0003448	antisense lncRNA gene	Chr2:61438723-61556753 (+)
CBA/J	MGP_CBAJ_G0003482	antisense lncRNA gene	Chr2:66282696-66403829 (+)
DBA/2J	MGP_DBA2J_G0003490	antisense lncRNA gene	Chr2:59244486-59359205 (+)
FVB/NJ	MGP_FVBNJ_G0003509	antisense lncRNA gene	Chr2:58765681-58879639 (+)
LP/J	MGP_LPJ_G0003563	antisense lncRNA gene	Chr2:61870004-61989145 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003497	antisense lncRNA gene	Chr2:67970990-68104258 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003678	antisense lncRNA gene	Chr2:61330777-61446507 (+)
PWK/PhJ	MGP_PWKPhJ_G0003403	antisense lncRNA gene	Chr2:59108226-59223040 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003348	antisense lncRNA gene	Chr2:61429455-61598233 (+)
WSB/EiJ	MGP_WSBEiJ_G0003483	antisense lncRNA gene	Chr2:61644820-61763939 (+)

Homology

• Gene Tree
  Gm13561
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13561
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000087518 (Evidence)
• NCBI Gene
  102637074

Representative Sequences			Length	Strain/Species
genomic	102637074	NCBI Gene Model | MGI Sequence Detail	13801	C57BL/6J
transcript	AK079054	GenBank | ENA | DDBJ | MGI Sequence Detail	1846	C57BL/6J

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;