Gm12439 Pseudogene Detail

Summary

• Symbol
  Gm12439
• Name
  predicted gene 12439

• Feature Type
  pseudogene
• IDs
  MGI:3651708
  NCBI Gene: 118568657
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:48675149-48675320 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 26.24 cM

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651708	pseudogene	Chr4:48675149-48675520 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012641	pseudogene	Chr4:47105842-47106206 (+)
A/J	MGP_AJ_G0012630	pseudogene	Chr4:45362451-45362815 (+)
AKR/J	MGP_AKRJ_G0012599	pseudogene	Chr4:46531360-46531724 (+)
BALB/cJ	MGP_BALBcJ_G0012614	pseudogene	Chr4:45470949-45471313 (+)
C3H/HeJ	MGP_C3HHeJ_G0012476	pseudogene	Chr4:47088228-47088592 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012935	pseudogene	Chr4:48817838-48818202 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011250	pseudogene	Chr4:42697178-42697542 (+)
CAST/EiJ	MGP_CASTEiJ_G0012230	pseudogene	Chr4:46677649-46678011 (+)
CBA/J	MGP_CBAJ_G0012456	pseudogene	Chr4:50389750-50390114 (+)
DBA/2J	MGP_DBA2J_G0012512	pseudogene	Chr4:45239681-45240045 (+)
FVB/NJ	MGP_FVBNJ_G0012513	pseudogene	Chr4:44503891-44504255 (+)
LP/J	MGP_LPJ_G0012582	pseudogene	Chr4:47165660-47166024 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012519	pseudogene	Chr4:53389210-53389574 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012936	pseudogene	Chr4:46713444-46713808 (+)
PWK/PhJ	MGP_PWKPhJ_G0012060	pseudogene	Chr4:45372972-45373345 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011874	pseudogene	Chr4:46228917-46229278 (+)
WSB/EiJ	MGP_WSBEiJ_G0012252	pseudogene	Chr4:46648835-46649199 (+)

Homology

• Gene Tree
  Gm12439
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000080850 (Evidence)
• NCBI Gene
  118568657

Representative Sequences			Length	Strain/Species
genomic	118568657	NCBI Gene Model | MGI Sequence Detail	172	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;