Gm13702 Pseudogene Detail

Summary

• Symbol
  Gm13702
• Name
  predicted gene 13702

• Feature Type
  pseudogene
• IDs
  MGI:3651725
  NCBI Gene: 115489554
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:83975449-83976058 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.33 cM

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651725	pseudogene	Chr2:83975234-83976058 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011736	pseudogene	Chr2:84814287-84815111 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012006	pseudogene	Chr2:87410390-87411214 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010515	pseudogene	Chr2:78384753-78385577 (+)
CAST/EiJ	MGP_CASTEiJ_G0011383	pseudogene	Chr2:84380779-84381603 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011627	pseudogene	Chr2:80315944-80316768 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011628	pseudogene	Chr2:92828932-92829756 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012002	pseudogene	Chr2:83857240-83858064 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0011060	pseudogene	Chr2:84001935-84002759 (+)
WSB/EiJ	MGP_WSBEiJ_G0011411	pseudogene	Chr2:84513587-84514411 (+)

Homology

• Gene Tree
  Gm13702
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13702
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13

• Ensembl
  ENSMUSG00000081980 (Evidence)
• NCBI Gene
  115489554

Representative Sequences			Length	Strain/Species
genomic	115489554	NCBI Gene Model | MGI Sequence Detail	610	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087