Gm12136 Pseudogene Detail

Summary

• Symbol
  Gm12136
• Name
  predicted gene 12136

• Feature Type
  pseudogene
• IDs
  MGI:3651746
  NCBI Gene: 382508
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:40460144-40461352 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 24.40 cM

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651746	pseudogene	Chr11:40459947-40461366 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010673	pseudogene	Chr11:39234764-39235972 (-)
A/J	MGP_AJ_G0010668	pseudogene	Chr11:37758228-37759436 (-)
AKR/J	MGP_AKRJ_G0010629	pseudogene	Chr11:38866416-38867624 (-)
BALB/cJ	MGP_BALBcJ_G0010643	pseudogene	Chr11:37939080-37940288 (-)
C3H/HeJ	MGP_C3HHeJ_G0010559	pseudogene	Chr11:38883420-38884628 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010919	pseudogene	Chr11:40415584-40416792 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010532	pseudogene	Chr11:42322798-42324006 (-)
DBA/2J	MGP_DBA2J_G0010568	pseudogene	Chr11:37477187-37478395 (-)
FVB/NJ	MGP_FVBNJ_G0010582	pseudogene	Chr11:37245275-37246483 (-)
LP/J	MGP_LPJ_G0010655	pseudogene	Chr11:39472132-39473340 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010557	pseudogene	Chr11:43605160-43606368 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010893	pseudogene	Chr11:38915173-38916381 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010443	pseudogene	Chr11:38657120-38658328 (-)

Homology

• Gene Tree
  Gm12136
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm12136
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000082390 (Evidence)
• NCBI Gene
  382508

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082390	Ensembl Gene Model | MGI Sequence Detail	1209	C57BL/6J
transcript	ENSMUST00000120460	Ensembl | MGI Sequence Detail	1209	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12136:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107473	Chr11:40461365-40461368 (-)	-15 bp