Gm11418 Gene Detail

Summary

• Symbol
  Gm11418
• Name
  predicted gene 11418

• Feature Type
  lncRNA gene
• IDs
  MGI:3651780
  NCBI Gene: 102634628
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:81478187-81484304 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 49.28 cM

Strain
Comparison

• SNPs within 2kb
  350 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651780	lncRNA gene	Chr11:81478185-81484918 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003022	antisense lncRNA gene	Chr11:82807153-82813252 (+)
A/J	MGP_AJ_G0002999	antisense lncRNA gene	Chr11:79622909-79629000 (+)
AKR/J	MGP_AKRJ_G0002980	antisense lncRNA gene	Chr11:81998751-82004867 (+)
BALB/cJ	MGP_BALBcJ_G0002986	antisense lncRNA gene	Chr11:80018644-80024761 (+)
C3H/HeJ	MGP_C3HHeJ_G0002942	antisense lncRNA gene	Chr11:82059220-82065332 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003128	antisense lncRNA gene	Chr11:85309582-85315683 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002667	antisense lncRNA gene	Chr11:76538153-76544271 (+)
CAST/EiJ	MGP_CASTEiJ_G0002912	antisense lncRNA gene	Chr11:82590029-82596114 (+)
CBA/J	MGP_CBAJ_G0002939	antisense lncRNA gene	Chr11:89041900-89051042 (+)
DBA/2J	MGP_DBA2J_G0002945	antisense lncRNA gene	Chr11:79181004-79187204 (+)
FVB/NJ	MGP_FVBNJ_G0002964	antisense lncRNA gene	Chr11:78737110-78743223 (+)
LP/J	MGP_LPJ_G0003021	antisense lncRNA gene	Chr11:83334562-83340694 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002952	antisense lncRNA gene	Chr11:89245300-89251404 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003132	antisense lncRNA gene	Chr11:82271637-82277747 (+)
PWK/PhJ	MGP_PWKPhJ_G0002871	antisense lncRNA gene	Chr11:80001641-80007905 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002816	antisense lncRNA gene	Chr11:81880069-81886098 (+)
WSB/EiJ	MGP_WSBEiJ_G0002942	antisense lncRNA gene	Chr11:82134650-82140783 (+)

Homology

• Gene Tree
  Gm11418
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm11418
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000087534 (Evidence)
• NCBI Gene
  102634628

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087534	Ensembl Gene Model | MGI Sequence Detail	6118	C57BL/6J
transcript	ENSMUST00000156193	Ensembl | MGI Sequence Detail	626	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11418:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103556	Chr11:81478179-81478190 (+)	-2 bp