Gm11638 Gene Detail

Summary

• Symbol
  Gm11638
• Name
  predicted gene 11638

• Feature Type
  lncRNA gene
• IDs
  MGI:3651788
  NCBI Gene: 115487808
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:105253978-105260855 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 68.73 cM

Strain
Comparison

• SNPs within 2kb
  233 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651788	lncRNA gene	Chr11:105253978-105281468 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015214	unclassified non-coding RNA gene	Chr11:108598144-108625482 (+)
A/J	MGP_AJ_G0015188	unclassified non-coding RNA gene	Chr11:103963787-103991031 (+)
AKR/J	MGP_AKRJ_G0015151	unclassified non-coding RNA gene	Chr11:107099943-107128549 (+)
BALB/cJ	MGP_BALBcJ_G0015150	unclassified non-coding RNA gene	Chr11:104384769-104412139 (+)
C3H/HeJ	MGP_C3HHeJ_G0014974	unclassified non-coding RNA gene	Chr11:107393407-107422485 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015607	unclassified non-coding RNA gene	Chr11:111965397-111993915 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013349	unclassified non-coding RNA gene	Chr11:101300739-101331320 (+)
CAST/EiJ	MGP_CASTEiJ_G0014527	unclassified non-coding RNA gene	Chr11:108436758-108465755 (+)
CBA/J	MGP_CBAJ_G0014953	unclassified non-coding RNA gene	Chr11:116603499-116630987 (+)
DBA/2J	MGP_DBA2J_G0015046	unclassified non-coding RNA gene	Chr11:103454401-103481928 (+)
FVB/NJ	MGP_FVBNJ_G0015057	unclassified non-coding RNA gene	Chr11:102971275-102998601 (+)
LP/J	MGP_LPJ_G0015127	unclassified non-coding RNA gene	Chr11:109067495-109095325 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015084	unclassified non-coding RNA gene	Chr11:115876644-115905166 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015646	unclassified non-coding RNA gene	Chr11:107576092-107605713 (+)
PWK/PhJ	MGP_PWKPhJ_G0014319	unclassified non-coding RNA gene	Chr11:104548472-104576382 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014106	unclassified non-coding RNA gene	Chr11:107332204-107366036 (+)
WSB/EiJ	MGP_WSBEiJ_G0014630	unclassified non-coding RNA gene	Chr11:107547597-107575943 (+)

Homology

• Gene Tree
  Gm11638
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000086487 (Evidence)
• NCBI Gene
  115487808

Representative Sequences			Length	Strain/Species
genomic	115487808	NCBI Gene Model | MGI Sequence Detail	6878	C57BL/6J
transcript	NR_190055	RefSeq | MGI Sequence Detail	2843	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;