Gm13801 Pseudogene Detail

Summary

• Symbol
  Gm13801
• Name
  predicted gene 13801

• Feature Type
  pseudogene
• IDs
  MGI:3651791
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:95963780-95963939 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 52.27 cM

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651791	pseudogene	Chr2:95963780-95963939 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011777	pseudogene	Chr2:97725542-97725701 (+)
A/J	MGP_AJ_G0011769	pseudogene	Chr2:93775531-93775690 (+)
AKR/J	MGP_AKRJ_G0011738	pseudogene	Chr2:96377277-96377436 (+)
BALB/cJ	MGP_BALBcJ_G0011747	pseudogene	Chr2:93964342-93964501 (+)
C3H/HeJ	MGP_C3HHeJ_G0011632	pseudogene	Chr2:96638258-96638417 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012048	pseudogene	Chr2:101021196-101021355 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010546	pseudogene	Chr2:90033505-90033664 (+)
CAST/EiJ	MGP_CASTEiJ_G0011419	pseudogene	Chr2:97214275-97214434 (+)
CBA/J	MGP_CBAJ_G0011609	pseudogene	Chr2:104520567-104520726 (+)
DBA/2J	MGP_DBA2J_G0011658	pseudogene	Chr2:93360508-93360667 (+)
FVB/NJ	MGP_FVBNJ_G0011664	pseudogene	Chr2:92469202-92469361 (+)
LP/J	MGP_LPJ_G0011730	pseudogene	Chr2:97918465-97918624 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011667	pseudogene	Chr2:107573748-107573907 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012042	pseudogene	Chr2:96475667-96475826 (+)
PWK/PhJ	MGP_PWKPhJ_G0011271	pseudogene	Chr2:93052741-93052900 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011094	pseudogene	Chr2:95957995-95958154 (+)
WSB/EiJ	MGP_WSBEiJ_G0011445	pseudogene	Chr2:97028881-97029040 (+)

Homology

• Gene Tree
  Gm13801
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm13801
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082327 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082327	Ensembl Gene Model | MGI Sequence Detail	160	C57BL/6J
transcript	ENSMUST00000120750	Ensembl | MGI Sequence Detail	160	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087