Rps11-ps2 Pseudogene Detail

Summary

• Symbol
  Rps11-ps2
• Name
  ribosomal protein S11, pseudogene 2
• Synonyms
  Gm11741

• Feature Type
  pseudogene
• IDs
  MGI:3651796
  NCBI Gene: 115487824
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:116273576-116274031 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 81.23 cM

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651796	pseudogene	Chr11:116273551-116274090 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010881	pseudogene	Chr11:120493991-120494447 (+)
A/J	MGP_AJ_G0010879	pseudogene	Chr11:115227647-115228103 (+)
AKR/J	MGP_AKRJ_G0010839	pseudogene	Chr11:118661661-118662117 (+)
BALB/cJ	MGP_BALBcJ_G0010856	pseudogene	Chr11:115636907-115637362 (+)
C3H/HeJ	MGP_C3HHeJ_G0010758	pseudogene	Chr11:119008658-119009114 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011129	pseudogene	Chr11:124180490-124180945 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009736	pseudogene	Chr11:112237009-112237464 (+)
CAST/EiJ	MGP_CASTEiJ_G0010583	pseudogene	Chr11:120381876-120382294 (+)
CBA/J	MGP_CBAJ_G0010729	pseudogene	Chr11:129078023-129078479 (+)
DBA/2J	MGP_DBA2J_G0010776	pseudogene	Chr11:114639451-114639906 (+)
FVB/NJ	MGP_FVBNJ_G0010792	pseudogene	Chr11:114165538-114165993 (+)
LP/J	MGP_LPJ_G0010864	pseudogene	Chr11:120874978-120875434 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010769	pseudogene	Chr11:128147106-128147562 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011108	pseudogene	Chr11:119319340-119319796 (+)
PWK/PhJ	MGP_PWKPhJ_G0010472	pseudogene	Chr11:115976245-115976700 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010288	pseudogene	Chr11:119069014-119069466 (+)
WSB/EiJ	MGP_WSBEiJ_G0010634	pseudogene	Chr11:119287391-119287847 (+)

Homology

• Gene Tree
  Rps11-ps2
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000081929 (Evidence)
• NCBI Gene
  115487824

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081929	Ensembl Gene Model | MGI Sequence Detail	456	C57BL/6J
transcript	ENSMUST00000121547	Ensembl | MGI Sequence Detail	456	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Rps11-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105954	Chr11:116273531-116273543 (+)	-39 bp