Gm14193 Pseudogene Detail

Summary

• Symbol
  Gm14193
• Name
  predicted gene 14193

• Feature Type
  pseudogene
• IDs
  MGI:3651818
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:99621001-99621153 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 63.07 cM

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651818	pseudogene	Chr11:99621001-99621153 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010837	pseudogene	Chr11:102425637-102425789 (+)
A/J	MGP_AJ_G0010835	pseudogene	Chr11:98103837-98103989 (+)
AKR/J	MGP_AKRJ_G0010794	pseudogene	Chr11:101140266-101140418 (+)
BALB/cJ	MGP_BALBcJ_G0010810	pseudogene	Chr11:98628032-98628184 (+)
C3H/HeJ	MGP_C3HHeJ_G0010714	pseudogene	Chr11:101313112-101313264 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011082	pseudogene	Chr11:105561687-105561839 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010539	pseudogene	Chr11:102310358-102310525 (+)
CBA/J	MGP_CBAJ_G0010684	pseudogene	Chr11:109971020-109971172 (+)
DBA/2J	MGP_DBA2J_G0010729	pseudogene	Chr11:97683587-97683739 (+)
FVB/NJ	MGP_FVBNJ_G0010749	pseudogene	Chr11:97174991-97175143 (+)
LP/J	MGP_LPJ_G0010819	pseudogene	Chr11:102906953-102907105 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010724	pseudogene	Chr11:109619988-109620140 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011061	pseudogene	Chr11:101518381-101518533 (+)
PWK/PhJ	MGP_PWKPhJ_G0010428	pseudogene	Chr11:98745803-98745955 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010589	pseudogene	Chr11:101482752-101482904 (+)

Homology

• Gene Tree
  Gm14193
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000078270 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078270	Ensembl Gene Model | MGI Sequence Detail	153	C57BL/6J
transcript	ENSMUST00000105067	Ensembl | MGI Sequence Detail	153	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm14193:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3668	Chr11:99620944-99620947 (+)	-55 bp