Gm11557 Pseudogene Detail

Summary

• Symbol
  Gm11557
• Name
  predicted gene 11557

• Feature Type
  pseudogene
• IDs
  MGI:3651826
  NCBI Gene: 665922
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:99568952-99569959 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 63.02 cM

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651826	pseudogene	Chr11:99568934-99570160 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010836	pseudogene	Chr11:102373523-102374544 (+)
A/J	MGP_AJ_G0010834	pseudogene	Chr11:98055720-98056663 (+)
AKR/J	MGP_AKRJ_G0010793	pseudogene	Chr11:101091615-101093121 (+)
BALB/cJ	MGP_BALBcJ_G0010809	pseudogene	Chr11:98560675-98561981 (+)
C3H/HeJ	MGP_C3HHeJ_G0010713	pseudogene	Chr11:101258701-101260491 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010538	pseudogene	Chr11:102254054-102255591 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0010728	pseudogene	Chr11:97631659-97632754 (+)
FVB/NJ	MGP_FVBNJ_G0010748	pseudogene	Chr11:97126207-97127705 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010723	pseudogene	Chr11:109562118-109565131 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011060	pseudogene	Chr11:101462894-101464039 (+)
PWK/PhJ	MGP_PWKPhJ_G0010427	pseudogene	Chr11:98695634-98696831 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm11557
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000082900 (Evidence)
• NCBI Gene
  665922

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082900	Ensembl Gene Model | MGI Sequence Detail	1008	C57BL/6J
transcript	ENSMUST00000120200	Ensembl | MGI Sequence Detail	1008	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;