Gm11599 Pseudogene Detail

Summary

• Symbol
  Gm11599
• Name
  predicted gene 11599

• Feature Type
  pseudogene
• IDs
  MGI:3651840
  NCBI Gene: 108167598
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:62699998-62700875 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 31.35 cM

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651840	pseudogene	Chr1:62698015-62700879 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010173	pseudogene	Chr1:62782331-62783209 (+)
A/J	MGP_AJ_G0010163	pseudogene	Chr1:60564531-60565409 (+)
AKR/J	MGP_AKRJ_G0010139	pseudogene	Chr1:62238017-62239824 (+)
BALB/cJ	MGP_BALBcJ_G0010145	pseudogene	Chr1:60633013-60633951 (+)
C3H/HeJ	MGP_C3HHeJ_G0010081	pseudogene	Chr1:62501931-62502813 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010398	pseudogene	Chr1:65188999-65189875 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010049	pseudogene	Chr1:67279072-67279950 (+)
DBA/2J	MGP_DBA2J_G0010077	pseudogene	Chr1:59976115-59976993 (+)
FVB/NJ	MGP_FVBNJ_G0010100	pseudogene	Chr1:59276930-59277814 (+)
LP/J	MGP_LPJ_G0010161	pseudogene	Chr1:63671707-63673414 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010060	pseudogene	Chr1:70204721-70206305 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010376	pseudogene	Chr1:62207950-62208828 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm11599
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm11599
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000084333 (Evidence)
• NCBI Gene
  108167598

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084333	Ensembl Gene Model | MGI Sequence Detail	878	C57BL/6J
transcript	ENSMUST00000118720	Ensembl | MGI Sequence Detail	878	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm11599:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6981	Chr1:62699972-62699973 (+)	-25 bp