Gm12379 Pseudogene Detail

Summary

• Symbol
  Gm12379
• Name
  predicted gene 12379

• Feature Type
  pseudogene
• IDs
  MGI:3651855
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:38028845-38029273 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 19.89 cM

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651855	pseudogene	Chr4:38028845-38029273 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012612	pseudogene	Chr4:35794354-35794782 (+)
A/J	MGP_AJ_G0012603	pseudogene	Chr4:34459993-34460421 (+)
AKR/J	MGP_AKRJ_G0012572	pseudogene	Chr4:35324819-35325247 (+)
BALB/cJ	MGP_BALBcJ_G0012588	pseudogene	Chr4:34775843-34776271 (+)
C3H/HeJ	MGP_C3HHeJ_G0012449	pseudogene	Chr4:35751778-35752206 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012905	pseudogene	Chr4:37160754-37161182 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011227	pseudogene	Chr4:32317041-32317470 (+)
CAST/EiJ	MGP_CASTEiJ_G0012205	pseudogene	Chr4:35532398-35532826 (+)
CBA/J	MGP_CBAJ_G0012427	pseudogene	Chr4:38402226-38402654 (+)
DBA/2J	MGP_DBA2J_G0012485	pseudogene	Chr4:34407117-34407545 (+)
FVB/NJ	MGP_FVBNJ_G0012486	pseudogene	Chr4:33806126-33806554 (+)
LP/J	MGP_LPJ_G0012554	pseudogene	Chr4:35878508-35878936 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012489	pseudogene	Chr4:41467789-41468217 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012905	pseudogene	Chr4:35465020-35465448 (+)
PWK/PhJ	MGP_PWKPhJ_G0012035	pseudogene	Chr4:34430119-34430547 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011851	pseudogene	Chr4:35205287-35205714 (+)
WSB/EiJ	MGP_WSBEiJ_G0012229	pseudogene	Chr4:35449707-35450135 (+)

Homology

• Gene Tree
  Gm12379
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12379
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082899 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082899	Ensembl Gene Model | MGI Sequence Detail	429	C57BL/6J
transcript	ENSMUST00000119607	Ensembl | MGI Sequence Detail	391	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;