Gm12692 Pseudogene Detail

Summary

• Symbol
  Gm12692
• Name
  predicted gene 12692

• Feature Type
  pseudogene
• IDs
  MGI:3651859
  NCBI Gene: 384106
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:98122982-98123527 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.57 cM

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651859	pseudogene	Chr4:98122793-98123627 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012776	pseudogene	Chr4:98382158-98382675 (-)
A/J	MGP_AJ_G0012762	pseudogene	Chr4:94952907-94953452 (-)
AKR/J	MGP_AKRJ_G0012732	pseudogene	Chr4:97269867-97270412 (-)
BALB/cJ	MGP_BALBcJ_G0012743	pseudogene	Chr4:95215793-95216338 (-)
C3H/HeJ	MGP_C3HHeJ_G0012600	pseudogene	Chr4:98061877-98062422 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013073	pseudogene	Chr4:102155785-102156330 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011356	pseudogene	Chr4:90367957-90368489 (-)
CAST/EiJ	MGP_CASTEiJ_G0012355	pseudogene	Chr4:95859435-95859952 (-)
CBA/J	MGP_CBAJ_G0012576	pseudogene	Chr4:105220146-105220691 (-)
DBA/2J	MGP_DBA2J_G0012638	pseudogene	Chr4:94726990-94727507 (-)
FVB/NJ	MGP_FVBNJ_G0012642	pseudogene	Chr4:93578653-93579198 (-)
LP/J	MGP_LPJ_G0012713	pseudogene	Chr4:98698773-98699290 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012652	pseudogene	Chr4:111007459-111007976 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013081	pseudogene	Chr4:97520577-97521094 (-)
PWK/PhJ	MGP_PWKPhJ_G0012177	pseudogene	Chr4:92870446-92870962 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011987	pseudogene	Chr4:94974466-94975011 (-)
WSB/EiJ	MGP_WSBEiJ_G0012381	pseudogene	Chr4:97633760-97634305 (-)

Homology

• Gene Tree
  Gm12692
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12692
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082388 (Evidence)
• NCBI Gene
  384106

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082388	Ensembl Gene Model | MGI Sequence Detail	546	C57BL/6J
transcript	ENSMUST00000121092	Ensembl | MGI Sequence Detail	546	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm12692:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42508	Chr4:98123604-98123624 (-)	-87 bp