Sec61g-ps3 Pseudogene Detail

Summary

• Symbol
  Sec61g-ps3
• Name
  SEC61 translocon subunit gamma, pseudogene 3
• Synonyms
  Gm12881

• Feature Type
  pseudogene
• IDs
  MGI:3651892
  NCBI Gene: 102640296
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:120978071-120978493 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 56.80 cM

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651892	pseudogene	Chr4:120978071-120987410 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012857	pseudogene	Chr4:122438680-122439102 (-)
A/J	MGP_AJ_G0012841	pseudogene	Chr4:117601402-117601824 (-)
AKR/J	MGP_AKRJ_G0012811	pseudogene	Chr4:120198641-120199063 (-)
BALB/cJ	MGP_BALBcJ_G0012821	pseudogene	Chr4:118215071-118215493 (-)
C3H/HeJ	MGP_C3HHeJ_G0012679	pseudogene	Chr4:121717326-121717748 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013160	pseudogene	Chr4:127035605-127036027 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011414	pseudogene	Chr4:111633721-111634107 (-)
CAST/EiJ	MGP_CASTEiJ_G0010811	pseudogene	Chr14:51278781-51278981 (+)
CBA/J	MGP_CBAJ_G0012655	pseudogene	Chr4:130494124-130494546 (-)
DBA/2J	MGP_DBA2J_G0012717	pseudogene	Chr4:118180038-118180460 (-)
FVB/NJ	MGP_FVBNJ_G0012720	pseudogene	Chr4:116693020-116693442 (-)
LP/J	MGP_LPJ_G0012793	pseudogene	Chr4:122560950-122561372 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012731	pseudogene	Chr4:135291849-135292271 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013172	pseudogene	Chr4:121262164-121262586 (-)
PWK/PhJ	MGP_PWKPhJ_G0010682	pseudogene	Chr14:49652362-49652529 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010505	pseudogene	Chr14:50341942-50342109 (+)
WSB/EiJ	MGP_WSBEiJ_G0012456	pseudogene	Chr4:121285036-121285458 (-)

Homology

• Human Ortholog
  SEC61G, SEC61 translocon subunit gamma

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SEC61G, SEC61 translocon subunit gamma
  
• Synonyms
  SSS1
• Links
  HGNC:18277

  NCBI Gene ID: 23480

  neXtProt AC: NX_P60059

  UniProt: P60059

  
  
• Chr Location
  7p11.2; chr7:54752250-54759974 (-)  GRCh38

---

• MGI Vertebrate Homology
  Sec61g-ps3 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SEC61G
• Gene Tree
  Sec61g-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Sec61g-ps3
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082891 (Evidence)
• NCBI Gene
  102640296

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082891	Ensembl Gene Model | MGI Sequence Detail	423	C57BL/6J
transcript	ENSMUST00000121191	Ensembl | MGI Sequence Detail	203	Not Applicable

Other
Accession IDs

MGI:7461945

References

• Summaries
  All 9

  Gene Ontology 1

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:164563 The Gene Ontology Consortium, Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs. 2010 Oct;