Gm12874 Pseudogene Detail

Summary

• Symbol
  Gm12874
• Name
  predicted gene 12874

• Feature Type
  pseudogene
• IDs
  MGI:3651901
  NCBI Gene: 100504420
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:122486777-122487861 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.22 cM

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651901	pseudogene	Chr4:122486777-122487861 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012865	pseudogene	Chr4:123984923-123990182 (+)
A/J	MGP_AJ_G0012849	pseudogene	Chr4:119132475-119133624 (+)
AKR/J	MGP_AKRJ_G0012819	pseudogene	Chr4:122336691-122337722 (+)
BALB/cJ	MGP_BALBcJ_G0012828	pseudogene	Chr4:119700870-119701848 (+)
C3H/HeJ	MGP_C3HHeJ_G0012686	pseudogene	Chr4:122452066-122453066 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013170	pseudogene	Chr4:128780450-128781546 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012435	pseudogene	Chr4:120117050-120117952 (+)
CBA/J	MGP_CBAJ_G0012662	pseudogene	Chr4:132033144-132036021 (+)
DBA/2J	MGP_DBA2J_G0012724	pseudogene	Chr4:119662061-119663224 (+)
FVB/NJ	MGP_FVBNJ_G0012728	pseudogene	Chr4:118258210-118259236 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012739	pseudogene	Chr4:136995360-136996395 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013182	pseudogene	Chr4:122729678-122730705 (+)
PWK/PhJ	MGP_PWKPhJ_G0012255	pseudogene	Chr4:116027435-116028337 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012463	pseudogene	Chr4:122812202-122813240 (+)

Homology

• Gene Tree
  Gm12874
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12874
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000084196 (Evidence)
• NCBI Gene
  100504420

Representative Sequences			Length	Strain/Species
genomic	100504420	NCBI Gene Model | MGI Sequence Detail	1085	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;